BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347705
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46130.1 | Symbols: ATMYB48, ATMYB48-3, MYB48 | myb domain p... 1208 0.0
> AT3G46130.1 | Symbols: ATMYB48, ATMYB48-3, MYB48 | myb domain
protein 48 | chr3:16945433-16946376 FORWARD LENGTH=771
Length=771
Score = 1208 bits (654), Expect = 0.0
Identities = 735/774 (95%), Gaps = 6/774 (1%)
Strand=Plus/Plus
Query 7 ATGATGCAAGAGGA--G-AACCGAAAAGGTCCATGGACAGAACAGGAGGACATACTTCTG 63
|||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGATGCAAGAGGAGGGAAACCGAAAAGGTCCATGGACAGAACAGGAAGACATACTTCTG 60
Query 64 GTAAATTTTGTTCACTTATTTGGAGATCGACGATGGGATTTTATTGCAAAAGTATCAGGT 123
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GTAAATTTTGTTCACTTATTTGGAGATCGACGATGGGATTTTATAGCAAAAGTATCAGGT 120
Query 124 TTGAACAGAACAGGAAAGAGTTGCAGGCTAAGGTGGGTTAATTACCTACATCCCGGTCTC 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 121 TTGAACAGAACAGGAAAGAGTTGCAGGCTAAGATGGGTTAATTACCTACATCCTGGTCTC 180
Query 184 AAACGCGGGAAGATGACGCCTCAAGAAGAGCGCCTCGTCCTTGAGCTTCACGCAAAGTGG 243
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AAACGTGGCAAGATGACGCCTCAAGAAGAGCGCCTCGTCCTTGAGCTTCACGCTAAGTGG 240
Query 244 GGAAACAGGTGGTCGAAAATAGCCCGAAAATTACCGGGCCGAACGGATAACGAGATAAAG 303
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 241 GGAAACAGGTGGTCGAAAATAGCCCGAAAATTGCCGGGACGAACGGATAACGAGATAAAG 300
Query 304 AATTACTGGAGGACTCATATGAGGAAGAAAGCTCAAGAAAAGAAGCGTCCTGTTTCGCCA 363
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AACTACTGGAGGACTCATATGAGGAAGAAAGCTCAAGAAAAGAAGCGTCCTGTTTCCCCA 360
Query 364 ACTTCCTCATTTTCCCACTGCAGCTCTTCATCTATGACCACTACAACCACCAATACTCAA 423
||||||||||||||| |||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 361 ACTTCCTCATTTTCCAACTGCAGCTCGTCATCTGTGACCACTACCACCACCAATACTCAA 420
Query 424 GATACATCGTGCCACTCGCGGAAATCTTCAGGGAAAGTGAGCTTTTACGACACTGGAGGA 483
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 421 GATACATCGTGCCACTCGCGTAAATCTTCAGGGGAAGTGAGCTTTTACGACACTGGAGGT 480
Query 484 TCCCGATCCACGGGGGAGATGATGAGTCAAGAAACCGAAGACATATACTCAATGGATGAT 543
||||||||||| |||| ||||| |||||||| ||||||| | ||||| ||||||||
Sbjct 481 TCCCGATCCAC--TAGAGA-GATGAATCAAGAAAACGAAGACGTGTACTCGTTGGATGAT 537
Query 544 ATATGGAGAGAGATTGATCACTCAGCAGTAAACATAATAAAACCGGTTAAAGACATCTAC 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATATGGAGAGAGATTGATCACTCAGCAGTAAACATAATAAAACCGGTTAAAGACATCTAC 597
Query 604 TCAGAACAAAGCCATTGCTTAAGTTACCCAACTCTGGCTTCTCCAACATGGGAAAGCTCA 663
||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||
Sbjct 598 TCAGAACAAAGCCATTGCTTAAGTTACCCAAATCTAGCTTCACCATCATGGGAAAGCTCA 657
Query 664 TTGGATTCTATATGGAACATGGATGCAGATAAAAGTAAGATGTCGTCTTCCTTTGCAAAT 723
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 658 TTGGATTCTATATGGAACATGGATGCAGATAAAAGTAAGATATCGTCTTACTTTGCAAAT 717
Query 724 GATCAGTTTCCTTTCTGTTTCCAACACAGTAGATCACCATGGTCGCCAGGTTAA 777
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 718 GATCAGTTTCCTTTCTGTTTCCAACACAGTAGATCACCATGGTCGTCAGGTTAA 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5