BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347795
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46930.1 | Symbols: | Protein kinase superfamily protein | ... 1838 0.0
AT5G58950.1 | Symbols: | Protein kinase superfamily protein | ... 606 2e-172
> AT3G46930.1 | Symbols: | Protein kinase superfamily protein
| chr3:17285643-17288032 FORWARD LENGTH=1844
Length=1844
Score = 1838 bits (995), Expect = 0.0
Identities = 1229/1339 (92%), Gaps = 28/1339 (2%)
Strand=Plus/Plus
Query 218 AGATACAGAGAAATCCAGTCAGTAATAAGGAGAGGTCTGTCTCTCCGTCGCCTCATATGG 277
|||| ||||| |||||||| | ||||||| |||| ||||| ||||||| |||||||||||
Sbjct 529 AGATGCAGAGGAATCCAGTTACTAATAAGAAGAGATCTGTTTCTCCGTTGCCTCATATGG 588
Query 278 CTCTTTCTGATGCTTTTAAGGAAGCAAAATCTGATATTAAGAGGTTTTCTACTCCACATC 337
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 589 CTCTTTCTGATGCTTTTATCGAAGCAAAGTCTGATATTAAGAGGTTTTCTACTCCACATC 648
Query 338 CTAGAAGAATGGAACCAGACAAGGGAATGAAGGCAAAGT--T-GCCCCGCAAAGGTTCTC 394
|||||||| |||||||||| |||||||||||||| |||| | | ||||||||| ||||
Sbjct 649 CTAGAAGAGTGGAACCAGAGAAGGGAATGAAGGCCAAGTCGTCGTCCCGCAAAGATTCTT 708
Query 395 CTGAGAAAAAATC-GTTTAGTCTACGGTCCCTATCACACTCGGGTCCTATTAGGGATCAT 453
||||||||||||| | ||| |||||||||||| || |||||||||||||||||||||| |
Sbjct 709 CTGAGAAAAAATCAG-TTAATCTACGGTCCCTGTCTCACTCGGGTCCTATTAGGGATCTT 767
Query 454 AGTATGGTGAAAACTCAAGAGAGGGAAAAGAGCAAGATAGATAAGAGGTCTTCAAAGTCT 513
|||| | |||| | ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 768 AGTACGCAGAAAGTTAAAGAGAGGGGAAAGAGCAAGATAGATAAGAAGTCTTCAAAGTCT 827
Query 514 GTTGACTATAGAGGTTCTAAAGTATGTTCTGCAGGAGTGCTTGAAGAGTACCTCATTGAT 573
|||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct 828 GTTGACTATAGAGGTTCTAAAGTAAGTTCTGCAGGAGTGCTTGAAGAATGCCTCATTGAT 887
Query 574 GTGTCTAAGTTGTCTTATGGGGATAGGTTTGCGCATGGGAAATATAGCCAGATTTATCAT 633
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 888 GTGTCTAAGTTGTCTTATGGGGATAGGTTTGCTCACGGGAAATATAGCCAGATTTATCAT 947
Query 634 GGAGAATACGAAGGCAAAGCTGTTGCTCTGAAGATTATCACAGCGCCTGAGGATAGTGAC 693
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GGTGAATATGAAGGCAAAGCTGTTGCTCTGAAGATTATCACAGCGCCTGAGGATAGTGAC 1007
Query 694 GACAGATTCTT-GGATGCTTGTTTAGAAAAAGAGTTTATCAAGGAAGCCACTCTTTTATC 752
|||| |||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1008 GACATATTCTTGGGA-GCTCGTTTAGAAAAAGAGTTTATCGTGGAAGCCACTCTTTTATC 1066
Query 753 TCGACTAAGCCATCCAAATGTCGTTAAGTTTGTTGGAGTGAATACTGGAAACTGTATCAT 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TCGACTAAGCCATCCAAATGTCGTTAAGTTTGTTGGAGTGAATACTGGAAACTGTATCAT 1126
Query 813 CACGGAGTATGTGCCTCGAGGGTCTTTAAGATCATATCTGCACAAGCTCGAGCAGAAATC 872
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 CACAGAGTATGTACCTCGAGGGTCTTTAAGATCATATCTGCACAAGCTCGAGCAGAAATC 1186
Query 873 CCTTCCTATGCAACAGCTAATCGAGTTTGGGCTGGATATTGCTAGAGGAATGGAATATAT 932
||||||| || ||||||||||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 1187 CCTTCCTTTGGAACAGCTAATCGATTTTGGTCTGGATATTGCTAAAGGAATGGAATATAT 1246
Query 933 TCACTCAAGAGAGATAGTTCATCGGGATGTTAAGCCAGAAAATGTTTTGATCGACAAAGA 992
||||||||||||||||||||||| |||| | ||||||||||| || ||||||||||| ||
Sbjct 1247 TCACTCAAGAGAGATAGTTCATCAGGATCTGAAGCCAGAAAACGTGTTGATCGACAATGA 1306
Query 993 CTTTCACTTGAAGATTGCTGACTTTGGCATAGCGTGCGAGGAGGAGTACTGTGATGTTTT 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CTTTCACTTGAAGATTGCTGACTTTGGCATAGCGTGCGAGGAGGAGTACTGTGATGTTTT 1366
Query 1053 GGGGGATAACACAGGAACCTATAGGTGGATGGCACCTGAAGTTTTAAAACGGATACCACA 1112
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 GGGGGATAACATAGGAACTTATAGGTGGATGGCACCTGAAGTTTTAAAACGGATACCACA 1426
Query 1113 TGGACGGAAGTGCGATGTTTATAGTTTTGGACTTCTTTTATGGGAAATGGTAGCTGGAGC 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 TGGACGGAAGTGCGATGTTTATAGTTTTGGACTTCTTTTATGGGAAATGGTAGCTGGAGC 1486
Query 1173 AGTTCCATATGAGGAGATGAAATTGGCTGCCCAAGTTGCCTACGCAGTCATAAACAAGAA 1232
| |||||||||||||||||||||| |||| ||| ||||||||||||| ||| |||||||
Sbjct 1487 ACTTCCATATGAGGAGATGAAATTTGCTGAACAAATTGCCTACGCAGTTATATACAAGAA 1546
Query 1233 CATTAGGCCGGTTATACCGAAGGATTGTCCAGCGGCCATGAAAGAGCTGATGGAGCTATG 1292
|||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct 1547 AATTAGGCCAGTTATACCGACGGATTGTCCAGCGGCCATGAAAGAGCTGATCGAGCGATG 1606
Query 1293 TTGGTCATCGCAGACAGACAAGAGACCAGAATTCTGGCAGATTGTCAAAGTGTTGGAACA 1352
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1607 TTGGTCATCGCAAACAGACAAGAGACCGGAATTCTGGCAGATTGTCAAAGTGTTGGAACA 1666
Query 1353 TTTTAAGAAGTCTCTGACAAACGAAGGAAGACTGAATCTTTTACCTAGCCAGATCTGTCC 1412
||| ||||||||||| |||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 1667 TTTCAAGAAGTCTCTAACAAGCGAAGGAAAACTTAATCTTTTACCTAGCCAGATCTGTCC 1726
Query 1413 AGAACTAAAGAAAGGTCATAAATTATGGATTCAGAAAATCGGCTCATTccaccaccacaa 1472
||||||||||||| ||| |||||| |||||||| | | |||| ||||||||||||||||
Sbjct 1727 AGAACTAAAGAAATGTCCTAAATTCTGGATTCATATATTCGGATCATTCCACCACCACAG 1786
Query 1473 ccaccaccaccaccacAGCGGTGGCGGCAGCAGCAGCAACACCATAGGCTCAGCCTTACC 1532
| | |||||||||||||||||||||||| | ||||||||||||
Sbjct 1787 C-A--------------GCGGTGGCGGCAGCAGCAGCAACA--A----CTCAGCCTTACC 1825
Query 1533 TAAGCCTAAATTCGCTTGA 1551
|||||||||||||||||||
Sbjct 1826 TAAGCCTAAATTCGCTTGA 1844
Score = 143 bits (77), Expect = 6e-33
Identities = 83/86 (97%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1 ATGGATGGAGAGGTTACTTCTTGGATTAGGAGGGCAAATTTCTCTCATACTGTTTGTTAT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 417 ATGGATGGAGAGGTTACTTCTTGGATTAGGAGAGCAAATTTCTCTCATACTGTTTGTTAT 476
Query 61 CGTATGATTACACCGAGCTTAGAATC 86
||||||||||| ||||| ||||||||
Sbjct 477 CGTATGATTACGCCGAGTTTAGAATC 502
> AT5G58950.1 | Symbols: | Protein kinase superfamily protein
| chr5:23800928-23803673 REVERSE LENGTH=2310
Length=2310
Score = 606 bits (328), Expect = 2e-172
Identities = 916/1191 (77%), Gaps = 76/1191 (6%)
Strand=Plus/Plus
Query 204 TGTTGTTGGTACTGAGATACAGAGAAATCCAGTCAGTAATAAGGAGAGGTCTGTCTCTCC 263
|||||||| | | || ||||||| ||| || || | | ||||| |||| ||||| |||||
Sbjct 770 TGTTGTTGATTCGGAAATACAGACAAACCCGGTTACTCATAAGCAGAGATCTGTTTCTCC 829
Query 264 GTCGCCTCATATGGCTCTTTCTGATGCT-TTTAAGGAAGCAAAATCTGATATTAAGAGGT 322
|||||||| |||||| || | |||| | ||||||||||| | ||||| |||||| |
Sbjct 830 TTCGCCTCAGATGGCTGTTCCCGATG-TGTTTAAGGAAGCGAGGTCTGAGCGTAAGAGAT 888
Query 323 TTTCTACTCCACATCCTAGAAGAATGGAACCAGACAAGGGAATGAAGGCAAAGTT-GCCC 381
|||||||||||||||| |||||| ||||| | || |||||||||||| | ||||| | |
Sbjct 889 TTTCTACTCCACATCCAAGAAGAGTGGAATCGGAAAAGGGAATGAAGCCTAAGTTATCTC 948
Query 382 CGCAAAGGTTCTCCTGAGAAAAAATCGTTT-AGTCTACGGTCCCTATCACACTCGGGTCC 440
||| | || ||| || | ||| ||| | | | |||| | || | || |||||
Sbjct 949 ATAAAAACTCCT-TTGACAAGAGATCATTTAACT-TGCGGT--C--TC-C-TTCAGGTCC 1000
Query 441 TATTAGGGATCATAGTA-TGGTGAAAACTCAAGAGAGGGAAAAGAGCAAGATA-GATAAG 498
||| || |||| | | | | ||| || ||||||||||| |||||||||| | || |
Sbjct 1001 TATCAGAGATCTTGGCACT-TTGAGAATTCAAGAGAGGGTCAAGAGCAAGA-AGGA-CAC 1057
Query 499 AGG-TCTTCAAAGTC-TGTTGACT-ATAGAGGTTC-TAAAGT-ATGTTCTGCAGG-AG-T 551
|| | || ||| | | |||| | ||| || || || ||| | || ||| || || |
Sbjct 1058 TGGATGGTCTAAG-CTTTTTGA-TAATACTGG-TCGTAGAGTGA-GTGCTG-TGGAAGCT 1112
Query 552 GCTTGAAGAGTACC-TCATTGATGTGTCTAAGTTG-TCTTATGGGGATAGGTTTGCGCAT 609
| |||||||| || | ||||| |||| ||| || |||| |||| || |||||| |||
Sbjct 1113 TC-TGAAGAGTTCCGT-GTTGATATGTCAAAGCTGTTCTT-TGGGCTTAAGTTTGCTCAT 1169
Query 610 GGGAAATATAGCCAGATTTATCATGGAGAA-TACGAAGGCAAAGCTGTTGCTC-TGAAGA 667
|| ||| |||| | | |||||||| || || |||| ||||||||||| | |||||
Sbjct 1170 GGTTTATACAGCCGGCTATATCATGG-TAAGTATGAAGATAAAGCTGTTGC-CGTGAAGC 1227
Query 668 TTATCACAGCGCCTGAGGATAGTGACGA-CA--GATTCTT-GGATGCTTGTTTAGAAAAA 723
||||||| | ||||| | | |||||| | ||| ||| ||| ||| ||||||| |||
Sbjct 1228 TTATCACTGTACCTGATG--A-TGACGATAATGGATGCTTGGGA-GCTCGTTTAGAGAAA 1283
Query 724 GAGTTTATCAAGGAAGCCACTCTTTTATCTCGACTAAGCCATCCAAATGTCGTTAAGTTT 783
|||||| |||||||| || ||||| |||||| | | |||||||||||| | ||||||
Sbjct 1284 CAGTTTACCAAGGAAGTGACCCTTTTGTCTCGATTGACCCATCCAAATGTTATAAAGTTT 1343
Query 784 GTTGGA--GT---GA-AT---ACTGGAAACTGTATCATCACGGAGTATGTGCCTCG-AGG 833
|||||| || | || ||| | | ||| || ||||| ||||| | ||| | |||
Sbjct 1344 GTTGGAGCGTACAAAGATCCGCCTGTATATTGTGTCCTCACGCAGTATTTACCT-GAAGG 1402
Query 834 GTCTTTAAGATCATATCTGCACAAG-CTCGAGCAGAAATCCCTTCCTATGCAACAGCTAA 892
||||||||||| | |||||||||| || ||| | | || |||||| || || |||| |
Sbjct 1403 ATCTTTAAGATCTTTTCTGCACAAGCCT-GAGAATAGGTCTCTTCCTTTGAAAAAGCTTA 1461
Query 893 TCGAGTTTGGGCTGGATATTGCTAGAGGAATGGAATATATTCACTCAAGAGAG-ATAGTT 951
| ||||||| | |||||||||||||| |||||||||||||||||| || | ||| ||
Sbjct 1462 TAGAGTTTGCTATAGATATTGCTAGAGGGATGGAATATATTCACTCACGA-CGCATAATT 1520
Query 952 CATCGGGATGTTAAGCCAGAAAATGTTTTGATCGACAAAGACTTTCACTTGAAGATTGCT 1011
||||||||| |||||||||||||||| ||||||||| |||| || || |||||||| |||
Sbjct 1521 CATCGGGATCTTAAGCCAGAAAATGTATTGATCGACGAAGAATTCCATTTGAAGATCGCT 1580
Query 1012 GACTTTGGCATAGCGTGCGAGGAGGAGTACTGTGATGTTTTGGGGGATAACACAGGAACC 1071
||||||||||||||||||||||||||||||||||| | |||| ||| || | |||||
Sbjct 1581 GACTTTGGCATAGCGTGCGAGGAGGAGTACTGTGACATGTTGGCTGATGACCCCGGAACA 1640
Query 1072 TATAGGTGGATGGCACCTGAAGTTTTAAAACGGATACCACATGGACGGAAGTGC-GATGT 1130
||||||||||||||||||||| | ||||||||| |||||||||||| ||| || |||||
Sbjct 1641 TATAGGTGGATGGCACCTGAAATGATAAAACGGAAACCACATGGACGTAAG-GCCGATGT 1699
Query 1131 TTATAGTTTTGGACTTC-TTTTATGGGAAATGGTAGCTGGAGCAGTTCCATATGAGGAGA 1189
|| || |||||||| | |||||||||||||||||||||||||| | ||||||||||| |
Sbjct 1700 ATACAGCTTTGGACT-CGTTTTATGGGAAATGGTAGCTGGAGCAATCCCATATGAGGACA 1758
Query 1190 TGAAATTGGCTGCCCAAGTTGCCTACGCAGTCATAAACAAGAACATTAGGCCGGTTATAC 1249
|||| | || |||| ||| | ||||||| || | |||||||||||||| | ||| |
Sbjct 1759 TGAA-TC--CTATTCAAGCTGCTTTCGCAGTCGTACATAAGAACATTAGGCCAGCTATCC 1815
Query 1250 CGA-AGGATTGTCCAGCGGCCATGAAAGAGCTGATGGAGCTA-TGTTGGTCA-TCGCAGA 1306
|| || ||||||||| |||||||||| ||||| |||| | |||||||| | |||
Sbjct 1816 CGGGAG-ATTGTCCAGTAGCCATGAAAGCTCTGATAGAGC-AGTGTTGGTCGGTTGCAC- 1872
Query 1307 CAGACAAGAGACCAGAATTCTGGCAGATTGTCAAAGTG-TTGGAACATTTT 1356
|||| |||||||| || ||||||||||| || |||||| ||| |||| |||
Sbjct 1873 CAGATAAGAGACCCGAGTTCTGGCAGATAGTGAAAGTGCTTG-AACAGTTT 1922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5