BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347817
Length=3069
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47110.1 | Symbols: | Leucine-rich repeat protein kinase fa... 5007 0.0
AT5G20480.1 | Symbols: EFR | EF-TU receptor | chr5:6922480-6925... 464 2e-129
AT1G09995.1 | Symbols: | DNA repair DEAD helicase RAD3/XP-D su... 63.9 9e-09
> AT3G47110.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:17347103-17350296 REVERSE LENGTH=3078
Length=3078
Score = 5007 bits (2711), Expect = 0.0
Identities = 2954/3072 (96%), Gaps = 13/3072 (0%)
Strand=Plus/Plus
Query 1 ATGGGGTTTCCTTGTATTGTTATGAGGCTGATTCTTGTATCTGCTTTACTAGTCTCTGTG 60
|||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGGGGTTCCTTGTATTGTTATGAGACTGATTCTTGTATCTGCTTTACTTGTCTCTGTG 60
Query 61 TCACTTGAACATTCAGATATGGTCTGTGCACAAACAATCAGATTGACGGAGGAGACTGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCACTTGAACATTCAGATATGGTCTGTGCACAAACAATCAGATTGACGGAGGAGACTGAT 120
Query 121 AAACAAGCATTGCTTGAGTTCAAGTCTCAAGTTTCTGAAACAAGTAGAGTTGTGTTGGGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACAAGCATTGCTTGAGTTCAAGTCTCAAGTTTCTGAAACAAGTAGAGTTGTGTTGGGC 180
Query 181 TCGTGGAATGACTCCCTGCCTCTCTGTAGCTGGACCGGAGTTAAGTGTGGCCTCAAACAC 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 TCGTGGAATGACTCCCTGCCTCTCTGTAGCTGGACCGGTGTTAAGTGTGGCCTCAAACAC 240
Query 241 AGAAGAGTAACTGGTGTGGATCTTGGAGGACTGAAACTAACTGGTGTAGTCTCTCCCTTT 300
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 241 AGGAGAGTAACTGGTGTGGATCTTGGAGGACTAAAACTAACCGGTGTAGTCTCTCCCTTT 300
Query 301 GTCGGTAACCTCTCATTTCTTAGATCATTAAATCTTGCAGACAACTTTTTCCGTGGTGCC 360
|| ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 301 GTTGGTAACCTCTCATTTCTTAGATCTTTGAATCTTGCAGACAACTTTTTCCATGGTGCC 360
Query 361 ATCCCTTTAGAGGTTGGAAACTTGTTCAGGCTTCAATATTTGAACATGAGCAATAATTT- 419
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCCCTTCAGAGGTTGGAAACTTGTTCAGGCTTCAATATTTGAACATGAGCAATAATTTA 420
Query 420 TCTTGGAGGGGTGATCCCGGTTGTTCTGTCGAACTGCTCTAGTCTTTCAACACTTGATTT 479
| ||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 421 T-TTGGAGGGGTGATTCCGGTTGTTCTGTCGAACTGCTCTAGCCTGTCAACACTTGATTT 479
Query 480 ATCATCAAATCATCTTGAACAAGGCGTGCCTTTTGAGTTCGGTTCACTGTCTAAGCTTGT 539
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 480 ATCATCAAATCATCTTGAACAAGGCGTGCCTTTGGAGTTTGGTTCGCTGTCTAAGCTTGT 539
Query 540 CATTCTATCTCTTGGTACAAACAATCTAACAGGGAAGTTTCCTGCCTCATTGGGAAACCT 599
| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCTTCTCTCTCTTGGTAGAAACAATCTAACAGGGAAGTTTCCTGCCTCATTGGGAAACCT 599
Query 600 GACATCACTCCAAATGCTCGATTTTATATATAACCAAATAGAAGGAGAGATCCCTGGGAA 659
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 GACATCACTCCAGATGCTCGATTTTATATATAACCAAATAGAAGGAGAGATCCCTGGGGA 659
Query 660 TATAGCCAGACTGAAACAGATGGTCTTTTTCCGAATAGCATTAAACAAGTTTAATGGTGT 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 660 TATAGCCAGACTGAAACAGATGATCTTTTTCCGAATAGCATTAAACAAGTTTAATGGGGT 719
Query 720 TTTCCCTCCTCCAGTTTACAACCTGTCCTCACTAATTTTCCTGTCCATTACCGGCAACAG 779
||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 720 TTTCCCTCCTCCAATTTACAACCTGTCTTCACTAATATTCCTGTCCATTACCGGCAACAG 779
Query 780 TTTCTCTGGCACCCTTAGGCCTGACTTTGGTTCTCTTCTCCCTAACCTTCAAATACTATA 839
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTTCTCTGGCACCCTTAGACCTGACTTTGGTTCTCTTCTCCCTAACCTTCAAATACTATA 839
Query 840 TATGGGGATAAATAATTTCACGGGTACCATTCCAGAGACACTTTCCAATATCTCA-GTTC 898
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 840 TATGGGGATAAATAGTTTCACGGGTACCATTCCAGAGACACTTTCCAATATCTCAAGT-C 898
Query 899 TTCAACAGCTTGATATTCCGTCTAACCATCTTACTGGAAAGATACCATTGAGTTTTGGGA 958
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 899 TTCGACAACTTGATATTCCGTCTAACCATCTTACTGGAAAGATACCATTGAGTTTCGG-A 957
Query 959 A-ACTTCAGAATTTATTACAGCTAGGCCTTAATAATAACTCTCTGGGAAACTACTCTTCT 1017
| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGACTTCAGAATCTATTACTGCTAGGCCTTAATAATAACTCTCTGGGAAACTACTCTTCT 1017
Query 1018 GGTGATCTTGATTTTCTTGGTACACTGACTAACTGCAGTCAGTTGCAGTACTTGAGTTTT 1077
||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||
Sbjct 1018 GGTGATCTTGATTTTCTTGGTGCACTGACTAACTGCAGTCAGTTGCAGTATTTGAATGTT 1077
Query 1078 GGCTTCAACAAACTTGGCGGTCAGTTACCTGTCTTTATAGCCAATCTCTCCACCCAATTA 1137
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1078 GGCTTCAACAAACTCGGCGGTCAGTTGCCTGTCTTTATAGCCAATCTCTCCACCCAATTA 1137
Query 1138 ACTGAGCTCTCCCTTGGTGGAAATCTCATCTCTGGAAGTATTCCTCATGGCATAGGGAAT 1197
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACTGAGCTCTCTCTTGGTGGAAATCTCATCTCTGGAAGTATTCCTCATGGCATAGGGAAT 1197
Query 1198 CTCGTAAGCCTGCAAACATTAGACTTGGGCGAAAATCTGTTGACAGGCAAACTTCCTCCC 1257
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CTTGTAAGCCTGCAAACATTAGACTTGGGCGAAAATCTGTTGACAGGCAAACTTCCTCCC 1257
Query 1258 TCATTGGGAGAACTTTCTGAACTGAGAAAAGTCTTGCTCTATTCAAATGGACTGTCTGGA 1317
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TCATTGGGAGAACTTTCTGAATTGAGAAAAGTCTTGCTCTATTCAAATGGACTGTCTGGA 1317
Query 1318 GAGATACCATCTTCCTTGGGGAATATCAGTGGGCTAACATACCTGTATTTGCTTAACAAC 1377
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1318 GAGATACCATCTTCCTTGGGGAATATCAGTGGGCTAACATACCTGTATCTGCTTAACAAC 1377
Query 1378 AGTTTTGAAGGAAGCATCCCTTCAAGTCTTGGAAGTTGCAGCTACCTTCTAGACTTGAAC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AGTTTTGAAGGAAGCATCCCTTCAAGTCTTGGAAGTTGCAGCTACCTTCTAGACTTGAAC 1437
Query 1438 CTCGGTACTAATAAGTTGAATGGCAGCATACCCCATGAGCTTATGGAACTTCCATCTCTT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CTCGGTACTAATAAGTTGAATGGCAGCATACCCCATGAGCTTATGGAACTTCCATCTCTT 1497
Query 1498 GTCGTCTTAAATGTTTCATTTAATTTGTTGGTTGGCCCTTTGAGAGAAGATGTTGGAAAG 1557
|||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1498 GTCGTCTTAAATGTCTCATTTAATTTGTTGGTTGGCCCTTTGAGACAAGACATTGGAAAG 1557
Query 1558 CTTAAATTTCTATTAGCTCTAGACGTTTCATACAATAAACTATCAGGACAGATTCCACGG 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 CTTAAATTTCTATTAGCTCTAGACGTTTCATACAATAAACTATCAGGACAGATTCCACAA 1617
Query 1618 ACCTTGGCGAATTGTCTCTCACTAGAATTCCTTTTGCTGCAAGGGAATTCATTTTTTGGG 1677
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1618 ACCTTGGCGAATTGTCTCTCACTAGAATTCCTTTTGCTGCAAGGGAATTCATTTGTTGGG 1677
Query 1678 TCCATTCCAGATATAAGAGGGTTGACTGGCCTCAGGTTCCTAGATCTGTCGAAGAACAAT 1737
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1678 CCCATTCCAGATATAAGAGGGTTGACTGGCCTCAGATTCCTAGATCTGTCGAAGAATAAT 1737
Query 1738 CTCTCTGGTACAATACCTGAATATATGGCGAACTTTTCCAAACTGCAGAACCTGAATCTC 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 CTCTCTGGTACAATACCTGAATATATGGCGAACTTTTCCAAACTGCAGAACCTGAATCTC 1797
Query 1798 TCTGTGAACAACTTCGAAGGAGCTGTGCCAACGGAAGGGGTATTTCGTAATACCAGTGCG 1857
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 TCTTTGAACAACTTCGACGGAGCTGTGCCAACGGAAGGGGTATTTCGTAATACCAGTGCG 1857
Query 1858 ATATCGGTCATTGGTAACATAAATCTCTGTGGAGGCATCCCGTCATTACAGCTTGAGCCA 1917
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1858 ATGTCGGTCTTTGGTAACATAAACCTCTGTGGAGGCATCCCGTCATTACAGCTTCAGCCA 1917
Query 1918 TGCTCTGTAGAATTACCAGGAAGACATTCATCAGTCAGAAAGATAATCACCATTTGTGTC 1977
|||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1918 TGCTCTGTTGAATTACCAAGAAGGCATTCATCAGTCAGAAAGATAATCACCATTTGTGTC 1977
Query 1978 AGTGCAGGTATGGCAGCACTTTTCCTTCTATGTCTGTGCGTGGTTTATCTATGCCGGTAC 2037
||||||| ||||||||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 1978 AGTGCAGTTATGGCAGCACTTTTGCTTCTATGTCTGTGTGTGGTTTATCTATGCTGGTAC 2037
Query 2038 AAACAGAGAATGAAGAGTGTCAGAGCTAACAATAATGAGAATGATCGGTCTTTCTCCCCA 2097
|||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2038 AAACTGAGAGTGAAGAGTGTCAGAGCTAATAATAATGAGAATGATCGGTCTTTCTCCCCA 2097
Query 2098 GTGAAATCGTTTTATGAAAAGATAAGTTACGATGAGCTCTACAAGACAACCGGTGGCTTC 2157
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2098 GTGAAATCGTTTTATGAAAAGATAAGTTATGATGAGCTCTACAAGACAACCGGTGGCTTC 2157
Query 2158 TCTTCCAGCAATTTGATTGGGTCGGGTAACTTTGGGGCTGTGTTTAAAGGATTTCTTGGG 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 TCTTCCAGCAATTTGATTGGGTCGGGTAACTTTGGGGCTGTGTTTAAAGGATTTCTTGGG 2217
Query 2218 TCTAAGAACAAGGCTGTTGCCATTAAAGTTTTGAATCTCTGCAAACGTGGAGCTGCAAAG 2277
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2218 TCCAAGAACAAGGCTGTTGCCATTAAAGTTTTGAATCTCTGCAAACGTGGTGCTGCAAAG 2277
Query 2278 AGTTTCATTGCAGAATGTGAAGCATTAGGAGGTATAAGGCATCGCAACCTTGTGAAGTTG 2337
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 AGTTTCATAGCGGAATGTGAAGCATTAGGAGGTATAAGGCATCGCAACCTTGTGAAGTTG 2337
Query 2338 GTTACTGTCTGTTCAAGTGCTGATTTTGAAGGAAATGATTTTAGAGCTCTAGTTTATGAG 2397
|||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 2338 GTTACTATCTGTTCAAGTTCTGATTTTGAAGGAAATGATTTTAGAGCTCTAGTGTATGAG 2397
Query 2398 TTCATGTCTAATGGAAACTTGGACATGTGGTTGCACCCGGATGAAATAGAAGAAACTGGC 2457
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2398 TTCATGCCTAATGGAAACTTGGACATGTGGCTGCACCCGGATGAAATAGAAGAAACTGGC 2457
Query 2458 AATCCCTC-AGGAACCCTGA-CCGTTGTTGAAAGACTCAACATTGCGATAGATGTTGCTT 2515
|||||||| || ||||||| || || ||| |||||||||||||| |||||||||||||
Sbjct 2458 AATCCCTCGAG-AACCCTGGGCCTTT-TTGCGAGACTCAACATTGCCATAGATGTTGCTT 2515
Query 2516 CGGCTTTGGTTTATCTTCATACTTATTGTCACAACCCTATAGCCCACTGTGATATTAAGC 2575
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2516 CGGCTCTGGTTTATCTTCATACTTATTGTCACAACCCTATAGCCCACTGTGATATTAAGC 2575
Query 2576 CAAGCAATATTCTACTTGACAAAGATTTGACTGCTCATGTAAGCGACTTTGGTTTGGCAC 2635
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2576 CAAGCAATATTCTACTAGACAAAGATTTGACTGCTCATGTAAGCGACTTTGGTTTGGCAC 2635
Query 2636 AACTCCTACTAAAATTTGATCGGGATACATTCCATATTCAATTCAGCTCTGCAGGTGTTC 2695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2636 AACTCCTACTAAAATTTGATCGGGATACATTCCATATTCAATTCAGCTCTGCAGGTGTTC 2695
Query 2696 GTGGAACCATTGGATATGCTGCACCAGAATATGGTATGGGAGGTCATCCATCAATAATGG 2755
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2696 GTGGAACCATTGGCTATGCTGCACCAGAATATGGTATGGGAGGTCATCCATCAATTATGG 2755
Query 2756 GCGACGTGTACAGCTTTGGTATCCTCCTATTGGAGATTTTCACTGGAAAAAGACCCACCG 2815
| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2756 GAGACGTGTACAGTTTTGGTATTGTCCTATTGGAGATTTTCACTGGAAAAAGACCCACCA 2815
Query 2816 ATAAGTTATTCGTGGACGGTTTAACTCTCCATAGTTTTACTAAATCAGCATTGCCGAAAC 2875
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 2816 ATAAGTTATTCGTGGACGGTTTAACTCTACATAGTTTTACTAAATCAGCATTGCAGAAAC 2875
Query 2876 GACAAGCACTAGATATCACAGAC-AAATCTATTCTCCGTGGTGCATACGCTCAGCATTTC 2934
||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 2876 GACAAGCACTAGATATCACAGACGAAA-CTATTCTCCGTGGTGCATATGCTCAGCATTTC 2934
Query 2935 AATATGGTCGAATGCTTGACCCTTGTGTTTCAGGTTGGAGTCAGTTGTTCAGAAGAATCA 2994
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2935 AATATGGTCGAATGCTTGACCCTTGTGTTTCGGGTGGGAGTCAGTTGTTCAGAAGAATCA 2994
Query 2995 CCGGTGAACCGGATATCAATGGCCGAGGCTGTAAGCAAGCTGGTCTCTATCAGAGAGAGt 3054
||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct 2995 CCGGTAAACCGGATATCAATGGCTGAGGCTATAAGCAAGCTGGTCTCTATCAGAGAAAGT 3054
Query 3055 ttttttCGGAGA 3066
||||| | ||||
Sbjct 3055 TTTTT-CAGAGA 3065
> AT5G20480.1 | Symbols: EFR | EF-TU receptor | chr5:6922480-6925887
FORWARD LENGTH=3321
Length=3321
Score = 464 bits (251), Expect = 2e-129
Identities = 1360/1872 (73%), Gaps = 169/1872 (9%)
Strand=Plus/Plus
Query 112 GAGACTGATAAACAAGCATTGCTTGAGTTCAAGTCTCAAGTTTCTGAAA-CAAGTAGAGT 170
|||||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct 102 GAGACTGATATGCAAGCTTTGCTTGAGTTCAAGTCTCAAGTTTCTGAAAACAACAAGAGA 161
Query 171 T-G-TGTTGGGCT-CGTGGAATGACTCCCTGCCTC-TCT-GTAGCTGGACCGGAGTTA-A 224
| | |||| || | |||||| ||||| | || | | | ||| |||| ||||| | |
Sbjct 162 GAGGTCTTGG-CTTCATGGAATCACTCC-TCCC-CATTTTGTAATTGGATTGGAGTCACA 218
Query 225 GTGTGGCCTCAAACACAGAA-GAGTAACTG-GTGTGGATCTTGGAGGACTGAAACTAACT 282
||||||| || | |||| |||| | | || || | ||||||||| | || ||||
Sbjct 219 -TGTGGCCGCAGG-AGAGAAAGAGTTA-TAAGTTTGAACCTTGGAGGATTCAAGTTAACC 275
Query 283 GGTGT-AGTCTCTCCCTTTGTCGGTAACCTCTCATTTCTTAGATCA-TTAAATCTTGCAG 340
||||| | |||| |||| | ||||| ||||| |||||||||| | |||| ||||||||
Sbjct 276 GGTGTGA-TCTCACCCTCCATTGGTAATCTCTCCTTTCTTAGATTACTTAA-TCTTGCAG 333
Query 341 ACAACT-TTTTCCGTGGTGCCATCCCTTTAGAGGTTGGAAA-CT-TGTTCAGGCTTCAAT 397
|||||| |||| | || |||||||| | |||| |||| || | || |||||||| |
Sbjct 334 ACAACTCTTTTG-GAAGTACCATCCCTCAAAAGGTGGGAAGGCTAT-TT-AGGCTTCAGT 390
Query 398 ATTTGAACATGAGCAATAATTTTCTTGGAGGG-GTGATCCCGGT-T-GTTCTGTCGAACT 454
| |||||||||||| ||||| |||| | ||| | ||| ||| | | || || || ||||
Sbjct 391 ACTTGAACATGAGCTATAATCTTCTCGAAGGAAG-GATTCCG-TCTAGT-CTTTCTAACT 447
Query 455 GCTCTAGTCTTTCAACAC-TTGATTTATCATCAAATCATCTTGAACAAGGCGTGCCTTTT 513
||||||| || || || | |||||||||| ||||| ||||||| ||| || || ||||
Sbjct 448 GCTCTAGACTGTCGAC-CGTTGATTTATCGTCAAACCATCTTGGACATGGTGTTCCTTCA 506
Query 514 GAGTTCGGTTCACTGTCTAAGCTTGTCATTCTATCTCTTGGTACAAACAATCTAACAGGG 573
|| | |||||||| |||||||||| |||||| |||| | | |||||| || || ||
Sbjct 507 GAACTAGGTTCACTTTCTAAGCTTGCCATTCTGGATCTTAGCAAAAACAACCTTACTGGA 566
Query 574 AAGTTTCCTGCCTCATTGGGAAACCTGACATCACTCCA-AATGCTCGATTTTATATATAA 632
|| |||||||| || || |||||| |||| ||||| || || ||| || ||| ||||||
Sbjct 567 AATTTTCCTGCATCTTTAGGAAACTTGACGTCACTTCAGAA-GCTTGACTTTGCATATAA 625
Query 633 CCAAAT-AGAAGGAGAGATCCCTGG-GAATATAGCCAGACTGAAACAGATGGTCTTTTTC 690
||| || ||| || ||||| || | ||| |||| ||| ||| || ||||| ||||||
Sbjct 626 CCAGATGAGA-GGTGAGATTCCAGACGAAG-TAGCTAGATTGACTCAAATGGTGTTTTTC 683
Query 691 CGAATAGCATTAAACAAGTTTA--ATGGTG-TTTTCCCTCCTCCAGTT-TACAACCTGTC 746
| ||||||| | || | |||| | |||| |||||| |||| || || |||||| | ||
Sbjct 684 CAAATAGCACTGAATA-GTTTTTCA-GGTGGTTTTCC-TCCTGCA-TTGTACAACATCTC 739
Query 747 CTCACTA-ATTTTCCTGTC-CATTACCGG-CAACAG-TTTCTCTGGCACCCTTAGGCCTG 802
||| || | | || | || | | | | | ||| || ||| || || | |||||| |||
Sbjct 740 CTCTCTTGAGTCTC-TATCTC-T-AGCTGACAATAGCTTT-TCGGGTAATCTTAGGGCTG 795
Query 803 ACTTTGGTTCTCTTCTCCCTAACCTTCA-AATACTATATATGGGGAT-AAATAATTTCAC 860
| ||||||| |||||| || || || | || ||| | | | |||| |||| | |||||
Sbjct 796 ATTTTGGTTATCTTCTACCAAATCTA-AGAAGACT-TCTTTTGGGAACAAATCAGTTCAC 853
Query 861 GGGTACC-ATTCC-AGAGACACTTTCCAATATCTCA-GTTCTTCAACAGCTT-GATAT-T 915
|| | | ||||| | | |||||| ||||||||||| | ||| || || || ||||| |
Sbjct 854 TGG-AGCTATTCCCAAA-ACACTTGCCAATATCTCAAGC-CTTGAA-AGGTTTGATATCT 909
Query 916 CCGTCTAACCATCT-TACTGGAAAG-ATACCATTGAGTTTTGGGAAACTT-CAG-AATTT 971
| ||||| | || | |||| | | || || ||||| ||||| ||| || | | ||| |
Sbjct 910 CA-TCTAATTACCTGT-CTGGTA-GTATCCCTTTGAGCTTTGG-AAAGTTAC-GTAATCT 964
Query 972 ATTACAGCTAGGCCTTAATAATAACTCTCTGGGAAACTA-CTCTTCTGGTGATCTTGATT 1030
| | |||| || |||||||||||| ||||| || ||| || ||| |||||| |
Sbjct 965 GTGGTGGTTAGGGATTCGTAATAACTCTCTTGGAAA-TAACTCGTCCAGTGGTCTTGAAT 1023
Query 1031 TTCTTGGTACACTGACTAACTGCAGTCAGTT-GCAGTACTTGAGTT-TTGGCTT-CAACA 1087
|| |||| | || | ||||||| ||| || | ||||||| || | |||| || ||| |
Sbjct 1024 TTATTGGGGCTGTGGCGAACTGCACTCAATTAG-AGTACTT-AGATGTTGG-TTACAATA 1080
Query 1088 AACTTGGCGGTCAG-TTACCTGTCTT-TATAGCCAATCTCTCCACC-CAATTAACTGAG- 1143
|||||| ||| || || |||| ||| |||||||||||| ||||| || || ||| ||
Sbjct 1081 GACTTGGAGGTGAGCTT-CCTG-CTTCTATAGCCAATCTGTCCACTACA-TTGACT-AGT 1136
Query 1144 CTCTCCCTTGGTGGAAATCTCATCTCTGGAAGTATTCCTCATGGCATAGGGAATCTCGTA 1203
|| | |||||| |||||| |||||||||| |||||||||| ||| |||||||| |||
Sbjct 1137 CTGTTCCTTGGACAAAATCTTATCTCTGGAACCATTCCTCATGACATCGGGAATCTTGTA 1196
Query 1204 AGCCTGCAA-ACATT-AGACTTGGGCGA-AAATCTGTTGACAGGCA-AACTTCCTCC-CT 1258
||||||||| | | | || ||| | | |||| |||||| || | ||||||| | ||
Sbjct 1197 AGCCTGCAAGA-ACTCAG-CTTAGAA-ACAAATATGTTGAGTGG-AGAACTTCC-CGTCT 1251
Query 1259 CATTGGGAGAA-CTTTCTGAACTGAGAAAAGTCT-TGC-TCT--ATTCAAATGGACTGTC 1313
| || || ||| |||| |||||| | | || | || ||| ||||||||| | | ||
Sbjct 1252 CTTTCGG-GAAGCTTT-TGAACTT-GCAG-GT-TGTGGATCTGTATTCAAATGCAATATC 1306
Query 1314 TGGAGAGATACCATCTTCCTTGGGGAATATCAGTGGGCTAACATAC-CTGTATTTGCTTA 1372
|| || |||||||||| || || || || | | || | || | || ||||| ||
Sbjct 1307 GGGGGAAATACCATCTTATTTTGGCAACATGACTCGGTTG-CAGAAGCTCCATTTGAATA 1365
Query 1373 ACAACAGTTTTGAAGGAAGCATCCCTTCA-AGTCTTGGAAGTTG-CAGCTACCTT-CTAG 1429
||| ||||| | ||||| |||||| || ||||||||| |||| | | ||| || ||||
Sbjct 1366 GCAATAGTTTCCACGGAAGAATCCCT-CAGAGTCTTGGACGTTGTC-GATAC-TTGCTAG 1422
Query 1430 AC-T-TGAACCTCGG-TACTAATAAGTTGAATGGCAGC-ATACCCCATGAGCTTA-TGGA 1484
|| | || | | || ||| |||| ||||||||| | | ||||| || || | | || |
Sbjct 1423 ACCTGTGGA--T-GGATACAAATAGGTTGAATGGGA-CTATACCTCAGGAAAT-ACTGCA 1477
Query 1485 ACTTCCATCTCTTGTCGT-CTTAAATGTT-TCATTTAATTTGTTGGTTGGCCCTTTGAGA 1542
| ||||||| || | | | | || || || ||| ||||| ||| |||| ||| |
Sbjct 1478 AATTCCATCCCTCG-CTTACATAGAT-TTGTCAAACAATTTCTTGACAGGCCATTTTCCA 1535
Query 1543 GAAGATGTTGGAAAGCTTA-AATTTCTA-TTAGCTCTAGACGTTTCATACAATAAACTAT 1600
||||| ||||||||| ||| || |||| || | |||| | ||| ||||| ||| |||
Sbjct 1536 GAAGAAGTTGGAAAG-TTAGAACTTCTTGTTGGA-CTAGGTGCTTCGTACAACAAATTAT 1593
Query 1601 CAGGACAGATTCCACGGACCT-T-GGCGAATTGTCTCTC-ACTAGAATTCCT-TTTGCTG 1656
||||| |||| |||| | || | || | |||||| || | | ||||| || ||| ||
Sbjct 1594 CAGGAAAGATGCCACA-AGCTATAGGGGG-TTGTCTTTCGA-TGGAATTTCTCTTTA-TG 1649
Query 1657 CAAGGGAATTCATTTTTTGG-GTCCATTCCAGATATAAGAGGGTTGACTG-GCCTCAGGT 1714
||||| ||||| ||| || | |||||||||||||||| ||||| | |||| | |
Sbjct 1650 CAAGGAAATTCGTTTGACGGAG-CCATTCCAGATATAAGCCGGTTGG-TAAGCCTAAAGA 1707
Query 1715 -TCCTAGATCTG-TCGAAGAACAATCTCTCTGGTACA-ATACCT-GAATATATGGCGAAC 1770
| | || || || || |||||||||||||| | |||||| || ||| |||| |
Sbjct 1708 ATGTT-GA-CTTCTCCAACAACAATCTCTCTGGC-CGGATACCTCGA-TATCTGGCCAG- 1762
Query 1771 TTTTCCAAA-CTGCAGAAC-CTGAATCTCTCTGTGAACAACTTCGAAGGA-GCTGTGCCA 1827
| |||| |||| ||| |||||||| ||| ||||||| || || ||| | ||||||
Sbjct 1763 TCTTCCTTCGCTGC-GAAATCTGAATCTTTCTATGAACAAGTTTGAGGGAAGG-GTGCCA 1820
Query 1828 ACGGA-AGGGGTATTTCGTAATACCAGTGC-GATATCGGTCATTGGTAACATAAATCTCT 1885
|| | ||| || ||||| ||| | | || | | || || ||||||||| |||| | |
Sbjct 1821 ACA-ACAGGAGTGTTTCGAAATGCTACAGCAGTT-TCTGTTTTTGGTAACACAAATATTT 1878
Query 1886 GTGGAGGCATCC 1897
| |||||| |||
Sbjct 1879 GCGGAGGCGTCC 1890
> AT1G09995.1 | Symbols: | DNA repair DEAD helicase RAD3/XP-D
subfamily protein | chr1:3262265-3263612 REVERSE LENGTH=724
Length=724
Score = 63.9 bits (34), Expect = 9e-09
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand=Plus/Plus
Query 124 CAAGCATTGCTTGAGTTCAAGTCTCAAGTTTCTG-AAACAA 163
||||| |||||||||||||||||||||||||||| ||||||
Sbjct 580 CAAGCTTTGCTTGAGTTCAAGTCTCAAGTTTCTGGAAACAA 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152607840606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5