BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347836
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55210.1 | Symbols: anac063, NAC063 | NAC domain containing ... 706 0.0
AT3G56560.1 | Symbols: anac065, NAC065 | NAC domain containing ... 281 1e-74
AT5G39540.1 | Symbols: | F-box associated ubiquitination effec... 204 3e-51
> AT3G55210.1 | Symbols: anac063, NAC063 | NAC domain containing
protein 63 | chr3:20465215-20466240 FORWARD LENGTH=843
Length=843
Score = 706 bits (382), Expect = 0.0
Identities = 644/765 (84%), Gaps = 39/765 (5%)
Strand=Plus/Plus
Query 638 TGTCTCCTCCGTCGACGATACCGTACATATTACCGCCAAGTTATAAGTTTGTGCC-AGCT 696
|||||||||||||||||||| | ||| ||||||||||| ||| |||||||||||| | |
Sbjct 2 TGTCTCCTCCGTCGACGATAGCTTACGTATTACCGCCAGGTTTTAAGTTTGTGCCAAAC- 60
Query 697 GATGAAGAAGTCATCTTTTGTTACTTGAAACCCTACTTGGACGACAACAAGAACGTATTG 756
||||||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||
Sbjct 61 GATGAAGAAGTCATCCATTGTTACTTGAAACCTTACTCGGACGGCAACACGAACGTATTG 120
Query 757 CTCAATGTTCCTATTCATCTTGTCAACATTTACGAGTCGAATCCAC-AACTACTTTCAGT 815
||| |||||||||||||||| ||||| || |||||||||||||||| ||| ||||||||
Sbjct 121 CTCCATGTTCCTATTCATCTCGTCAATATCTACGAGTCGAATCCACAAAC-ACTTTCAGA 179
Query 816 GGAATTTGATAAGGGTAATGACAAAGAATGGTTCATTATAACGGAGAGGAAAAAAGTTGA 875
|||||| | |||||||| || ||||||||||| ||||||||||||||||| ||||||||
Sbjct 180 GGAATTCCAGAAGGGTAACGATAAAGAATGGTTTATTATAACGGAGAGGAACAAAGTTGA 239
Query 876 TCAAGGTTTAAGCAAAACAAAGAGAGTTGGTAATGGTGGGACAACAAGGCAGAAACGTGG 935
||||||||||||| ||||||||||||||||| |||||| | || ||||||||||||||
Sbjct 240 TCAAGGTTTAAGCCAAACAAAGAGAGTTGGTTATGGTGCG--AA-AAGGCAGAAACGTGT 296
Query 936 CGACACTAAAGGAGGATATTGGCACGCAACAGTGGGTGCCCAGGAGATCATCGATGCTG- 994
||||||||| ||||||||||||||||||||||||| |||||| |||||| || || |
Sbjct 297 CGACACTAACGGAGGATATTGGCACGCAACAGTGGCTGCCCAAAAGATCAACGCTG--GA 354
Query 995 GA-GGTATCGTTGGCTACAAAACTG-CATTTGCATACTACGTTAGGG-AA-CAGTCAGCC 1050
|| ||| ||||| || |||||| | || | |||||||||||| ||| || || ||||
Sbjct 355 GATGGTGTCGTTCGCAACAAAA-GGCCACTGGCATACTACGTT-GGGAAACCA-TCAGAA 411
Query 1051 GACTTCAAAACTGATTGGTTAATGCTTGAATACTC-GTTGCATCACACTTGTCACAACAA 1109
| | ||||||||||||||||||||| |||||||| ||| ||||| ||| |||||||||
Sbjct 412 GGCGTCAAAACTGATTGGTTAATGCAAGAATACTCTCTTG-ATCACTCTTCTCACAACAA 470
Query 1110 CGACAAGGATTACACTTTGTGCAAGATCTATCCGACTCCACAAGCAACgaagaagaa-ag 1168
|||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |
Sbjct 471 CGACAAGGATTACACTTTGTGCAAGATCTATCTTACTCCACAAGCAACAAAGATGAATAA 530
Query 1169 a-aa-tggaagc-gcagaataagaagcagaagaaaggagaagTCGCTATTTCAGTTGCAC 1225
| || ||| || | |||| |||||||||||||||||||||| || | ||||||||||||
Sbjct 531 AGAAGTGGGAGAAG-AGAAGAAGAAGCAGAAGAAAGGAGAAGCCGTTGTTTCAGTTGCAC 589
Query 1226 ATGTGGAAGCATTGGAAGAGCATCAGCCTCGTAATGTCGAGTTTCCA-CAACCGCATCAA 1284
||||||||||||||||||||| | |||| |||||||||||| || | ||||||| | |
Sbjct 590 CTGTGGAAGCATTGGAAGAGCAGCTGCCTTGTAATGTCGAGTATC-ATCAACCGC-T-A- 645
Query 1285 TCGCAAGCCCTGCTGGATTCTTATCAACATCAGCCTCATGATTTTGCCTTTCAGCAACCG 1344
||| || ||| ||||||| |||| |||||||||||||| || | ||| || | |
Sbjct 646 --GCA--CC--GCTAGATTCTTGCCAACCGCAGCCTCATGATTTGGCGTATCAACAGCAG 699
Query 1345 CAATTTTCG-CAAGGCCCGA-TAGATTCTCAGCAACCGCTGCCTC 1387
|| |||| | | |||||| | | |||||| | ||||||| |||||
Sbjct 700 CAGTTTT-GTCCAGGCCC-ACTGGATTCTTATCAACCGCAGCCTC 742
Score = 569 bits (308), Expect = 2e-161
Identities = 465/538 (86%), Gaps = 22/538 (4%)
Strand=Plus/Plus
Query 7 TACATATTACCGCAAGGTTTTAAGTTTATGCC-ATCTGATGAACAAGTTATCTTTTGTTA 65
||| ||||||||| ||||||||||||| |||| | | |||||| |||| ||| ||||||
Sbjct 25 TACGTATTACCGCCAGGTTTTAAGTTTGTGCCAAAC-GATGAAGAAGTCATCCATTGTTA 83
Query 66 CTTGAAATCC-TACTTGGACGGCTACAAGAACGTATTGCTTGATGTTCCTATTCATCTCG 124
||||||| || |||| ||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 84 CTTGAAA-CCTTACTCGGACGGCAACACGAACGTATTGCTCCATGTTCCTATTCATCTCG 142
Query 125 TCAATATTTATGAGTCGAATCCAC-GACTACTTTCAGTGGATTTCGATAAGGGTAACGAC 183
||||||| || ||||||||||||| || |||||||| ||| ||| | |||||||||||
Sbjct 143 TCAATATCTACGAGTCGAATCCACAAAC-ACTTTCAGAGGAATTCCAGAAGGGTAACGAT 201
Query 184 AAAGAATGGTTTATTATAACGGAGAGaaaaaaaGTTGATCAAGGTTTAAGCAAAACAAAG 243
|||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||
Sbjct 202 AAAGAATGGTTTATTATAACGGAGAGGAACAAAGTTGATCAAGGTTTAAGCCAAACAAAG 261
Query 244 AGAGTTGGTAATGGTGGGACAACAAGGCAGAAACGTGGCGACACTAAAGGAGGATATTGG 303
||||||||| |||||| | || |||||||||||||| ||||||||| ||||||||||||
Sbjct 262 AGAGTTGGTTATGGTGCG--AA-AAGGCAGAAACGTGTCGACACTAACGGAGGATATTGG 318
Query 304 CACGCAACAGTGGGTGCACATGAGATCAATGCTGGAGA---TATCGTTGGCTACAAAACG 360
||||||||||||| ||| || ||||||| |||||||| | ||||| || |||||| |
Sbjct 319 CACGCAACAGTGGCTGCCCAAAAGATCAACGCTGGAGATGGTGTCGTTCGCAACAAAA-G 377
Query 361 G-CATTTGCATACTACGTTAGGG-AA-CAGTCAGCCGACGTCAAAACTGATTGGTTAATG 417
| || | |||||||||||| ||| || || |||| | ||||||||||||||||||||||
Sbjct 378 GCCACTGGCATACTACGTT-GGGAAACCA-TCAGAAGGCGTCAAAACTGATTGGTTAATG 435
Query 418 CTTGAATACTC-GTTGTATAACACTTTTCACAACAACGACAAGGATTACACTTTGTGCAA 476
| |||||||| ||| || || ||| |||||||||||||||||||||||||||||||||
Sbjct 436 CAAGAATACTCTCTTG-ATCACTCTTCTCACAACAACGACAAGGATTACACTTTGTGCAA 494
Query 477 GATCTATCTGACTCCACAAGCAACAaagaagaagaaagaagtggaaga-gcagaagaa 533
||||||||| ||||||||||||||||||| ||| |||||||||| ||| | |||||||
Sbjct 495 GATCTATCTTACTCCACAAGCAACAAAGATGAATAAAGAAGTGGGAGAAG-AGAAGAA 551
> AT3G56560.1 | Symbols: anac065, NAC065 | NAC domain containing
protein 65 | chr3:20955404-20956867 FORWARD LENGTH=687
Length=687
Score = 281 bits (152), Expect = 1e-74
Identities = 224/259 (86%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 558 AGAAAGATCCACGCCAGAACCGCAAAAGCAACCACCGTCGGAGAATCATTCTTCTTCTTC 617
|||||||||| ||| |||||||||| |||||||| ||| |||| || ||||||||| ||
Sbjct 234 AGAAAGATCCTGGCCGGAACCGCAAACGCAACCACAGTCAGAGATTCCTTCTTCTTCGTC 293
Query 618 TTTTTTGTCAGCTGATAACTTGTCTCCTCCGTCGACGATACCGTACATATTACCGCCAAG 677
|| |||| ||||||||||| |||||||||||||||||||| | ||| ||||||||||| |
Sbjct 294 TTCTTTGGCAGCTGATAACATGTCTCCTCCGTCGACGATAGCTTACGTATTACCGCCAGG 353
Query 678 TTATAAGTTTGTGCC-AGCTGATGAAGAAGTCATCTTTTGTTACTTGAAACCCTACTTGG 736
|| ||||||| |||| | | ||| ||||||||||| ||||||||||||||| |||| ||
Sbjct 354 TTTTAAGTTTATGCCAAAC-GATAAAGAAGTCATCAATTGTTACTTGAAACCTTACTCGG 412
Query 737 ACGACAACAAGAACGTATTGCTCAATGTTCCTATTCATCTTGTCAACATTTACGAGTCGA 796
||| ||||| |||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 413 ACGGCAACACCAACGTATTGCTCAATGTTCCTATTCATCGCGTCAATATCTACGAGTCGA 472
Query 797 ATCCACA-ACTACTTTCAG 814
||||||| || ||||||||
Sbjct 473 ATCCACAGAC-ACTTTCAG 490
> AT5G39540.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr5:15833743-15834420 REVERSE LENGTH=591
Length=591
Score = 204 bits (110), Expect = 3e-51
Identities = 231/287 (80%), Gaps = 18/287 (6%)
Strand=Plus/Plus
Query 1101 TCACAACAACGACAAGGATTACACTTTGTGCAAGATCTATCCGACTCCACAAGC---AAC 1157
|||||||| | |||||||||||| ||| |||||||| |||| ||||||||||| ||
Sbjct 270 TCACAACAGCAACAAGGATTACAATTTTTGCAAGATATATCTTACTCCACAAGCAATAAA 329
Query 1158 gaagaagaaagaaatggaag-cgcagaataagaagcagaagaaaggagaagTCGCTATTT 1216
||||||||||||| |||||| | |||| |||||||||||||||||||||| || | |||
Sbjct 330 GAAGAAGAAAGAAGTGGAAGAAG-AGAAGAAGAAGCAGAAGAAAGGAGAAGCCGTTGTTT 388
Query 1217 CAGTTGCACATGTGGAAGCATTGGAAGAGCATCAGCCTCGTAATGTCGAGTTTCCA-CAA 1275
||||||||||||||||||||||||||||||| || ||| | |||||||||| || | |||
Sbjct 389 CAGTTGCACATGTGGAAGCATTGGAAGAGCAGCAACCTTGCAATGTCGAGTATC-ATCAA 447
Query 1276 CCGCATCAATCGCAAGCCCTGCTGGATTCTTATCAACATCAGCCTCATGATTTTGCCTTT 1335
|||| | | ||| || ||| ||||||| |||| |||| ||||||||| | | |
Sbjct 448 CCGC-T-A---GCA--CC--GCTAGATTCTTGCCAACCGCAGCGTCATGATTTGGAATAT 498
Query 1336 CAGCAACCGCAATTTTCG-CAAGGCCCGATAGATTCTCAGCAACCGC 1381
|| || | ||| |||| | | ||||||| | |||||| | |||||||
Sbjct 499 CAACAGCAGCAGTTTT-GTCCAGGCCCGCTGGATTCTTATCAACCGC 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5