BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347883
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47870.1 | Symbols: SCP, LBD27 | LOB domain-containing prote... 1631 0.0
> AT3G47870.1 | Symbols: SCP, LBD27 | LOB domain-containing protein
27 | chr3:17659680-17661008 REVERSE LENGTH=1235
Length=1235
Score = 1631 bits (883), Expect = 0.0
Identities = 1027/1095 (94%), Gaps = 15/1095 (1%)
Strand=Plus/Plus
Query 1 ATGAGCAATACAAAAAACATCCACAAAGGGTTACTA-GAGAGGTTTTTAGATCTTCTCTT 59
||||||||||||||| |||||||||||||||||| | |||||| ||||||||||||||||
Sbjct 2 ATGAGCAATACAAAACACATCCACAAAGGGTTAC-AGGAGAGGCTTTTAGATCTTCTCTT 60
Query 60 GATCGCTCTTATAATTTTCATGACTCTAAAAGGCGGCACGAGTGGAGCTTGTGCCGCGTG 119
||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 61 GATCGCTCTTATAGTTTACATGACTCTTAAAGGCGGCACGAGTGGGGCTTGTGCCGCGTG 120
Query 120 CAAGTACCAACGTAGACGATGCGCCGCGGATTGCCCCCTCGCGCCTTACTTCCCAGCCGA 179
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CAAGTACCAACGTAGACGCTGCGCCGCGGACTGCCCCCTCGCGCCTTACTTCCCAGCCGA 180
Query 180 ACAACCGAAACTCTTCCAAAACGTTCACAGGCTATTCGGCGTAAGAAGCATCGTCAAGAT 239
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 ACAACCGAAACTTTTCCAAAACGTTCACAGGCTATTCGGCGTAAGAAGTATCGTCAAGAT 240
Query 240 CCTAGAAAAACTCGACGAAACTCAGAAACCAGAAGCCATGAAATCAATCATCTTCCAGTC 299
||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 CCTCGAAAAACTAGACGAAACTCAGAAACCAGAAGCAATGAAATCAATCATCTTCCAGTC 300
Query 300 TTATGTCCGTGACCGTTCTCCTGTATACGGCTGCCTCGGCGTCACGCAACAGCTTCAATA 359
|||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 301 TTATGTCCGTGACCGTTCTCCTGTCCACGGTTGCCTCGGCGTCACGCAACAACTTCAATA 360
Query 360 CATGATATGGCTTGCTGAAGAAGAACTCAAAGCTGTCAATTCTCAACTACAACTCTATCG 419
|||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 361 CATGATCTGGTTTGCTGAAGAAGAACTCAAAGCTGTCAATTCTCAATTACAACTATATCG 420
Query 420 CTCTCAACCACAAAACGGCCAAAATCAAAATCAAAACCATAATAATCATAATCAGATGAT 479
|||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct 421 CTCTCAACCACAAAACGGTCAAAATCAAAACCAAAACC---ATAATCATAATCAGATGAT 477
Query 480 TCATGAGCTTGGT-G-G-TGATAATAAGCAGCAAGAAGATGTTACATCGCAGCAGCTTGA 536
||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCATGAGCTTGGTAGTGATCATAATAAGCAGCAAGAAGATGTTACATCGCAGCAGCTTGA 537
Query 537 TTTGGGAATGGGACTAAACGTTCACAATAATCAGAGCAATGTTGTTACACCATTCTTTAG 596
||||| |||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 538 CTTGGGTATGGGACTTAACGTTAACAATAATCAGAGCAATGTCGTTACACCATTCTTTAG 597
Query 597 TCCATTATTACCAGTATCTGAAACACAACAGCCACAAATGTCTTACACTTATAGTTGCAG 656
| ||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 598 TTCATTATTACCAGTTTCCGAAACACAACAGCCACAAATGTCTTACACTTATAGCTGCAG 657
Query 657 TGAGGTTAACAACAATGGCTATAGTCCTCCTGCTTACAATACAGATTCAGGCAAGGAGAT 716
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 658 TGAGGTTAACAACAATGGCTATAGTCCTCCTGCTTATAATACAGATTCGGGCAAGGAGAT 717
Query 717 TCTGACCAACAACAATAATGTTTGGGGTGGTCAGAATCGATTTCTGTATAACGTCAACAA 776
|||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 718 TCTGACCAACAATAACAATGTTTGGGGTGATCAGAATCGATTTCTGTATAACAACAACAA 777
Query 777 TGGAGGAGGATTTAGCAACCAAAACGAGAGCTGTCACGAGATGAAGAGTAATAACGGTGT 836
||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 778 TGGAGGAGGATACAGCAACCAAAACGAGAGCTGTCATGAGATGAAGAG---TAACGGTGT 834
Query 837 AATGGCAATACAATCACAGCTCGTAAATCTGCAAATGGCATCAAATCATCAGCAAGTGGA 896
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 835 AATGGCAATACAATCACAGCTCGTAAATCTGCAAATGGTATCAAATCATCAGCGAGTGGA 894
Query 897 AGAAGAAGAAGATGCTCATGAATACGATGAGA-TCCATCAGTTTCTTGAAATCATTGACG 955
||||||||||| || ||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct 895 AGAAGAAGAAGCTGATCATGAATACGATGA-ACTCCATCAGTTTCTTGATATCATTGACG 953
Query 956 ATAGGCAATCATTTGCGGATTCTAAAGAAGCGTACGCGTCAAGCTCTGGTGGATCGTTGA 1015
||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 954 ATAGGCAATCATTTGGGGATTCTAAAGAAGCGTAGGCCTCAAGCTCTGGTGGATCGTTGA 1013
Query 1016 AAGAACAGATTGATGAAATTGGAGAGAATGAATTGAGAAGTGCAGCTACTTGCTTT-AGT 1074
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1014 AGGAACAGATTGATGAAATTGGAGAGAATGAATTGAGAAGTGCAGCTACTTG-TTTCAGT 1072
Query 1075 CTAACCAGTATGAAT 1089
||||||||| |||||
Sbjct 1073 CTAACCAGTGTGAAT 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5