BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347932
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48425.1 | Symbols: | DNAse I-like superfamily protein | ch... 1718 0.0
AT3G48420.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1478 0.0
> AT3G48425.1 | Symbols: | DNAse I-like superfamily protein |
chr3:17931818-17934744 FORWARD LENGTH=1438
Length=1438
Score = 1718 bits (930), Expect = 0.0
Identities = 1063/1128 (94%), Gaps = 5/1128 (0%)
Strand=Plus/Plus
Query 930 TCTCCAGAAACACCACGAAATTGCTAAAGCTATGAAGCGATTCTTTAAGCCCATAGAGAA 989
|||||| ||| | |||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 63 TCTCCATAAA-GCTACGAAATTGCTATAGCTATGAAGCGATTCTTCAAGCCCATAGAGAA 121
Query 990 GGAGGGTTCAACGGCGGCTAAGAAACCCTGCCTCTCGCCGGAAAAGCGTAAAGGAGACGG 1049
|||| ||| |||||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 122 GGAGAATTCTCCGGCGGCTAAGAAACCCTGCCTTTCGCCGGAAAAGCGTGACGGAGACGG 181
Query 1050 AGATGGAGTTGAAGAAGAGAAGAACCAGAAAGAGCCGTCCAAGTTTGTGACGTGGAACGC 1109
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 182 AGATGGAGTTGAAGAAGAGAAGAACCAGAACGAGCCGTCCAAGTTTATGACGTGGAACGC 241
Query 1110 TAATAGCTTCCTCCTTCGGGTGAAGAATGACTGGTCTCAGTTCTCTAAGTTCGTCTCCGA 1169
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 242 TAATAGCTTCCTCCTTCGGGTGAAAAATGACTGGTCTCAGTTCTCTAAGTTCGTCTCCGA 301
Query 1170 TTTTGACCCGGATGTCATCGCCGTACAGGAAGTAAGAATGCCTGCTGCTGGTGGGAAGGG 1229
||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 302 TTTTGACCCCGATGTCATCGCCATACAGGAAGTAAGGATGCCTGCTGCTGGTGGAAAGGG 361
Query 1230 AAAACCAAAAAATCC-TGAAGAGTTGAGCGATGACACGAAAGTTCTGCGTGAGGAAAAAC 1288
|||||| ||||| || |||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 362 AAAACCTAAAAA-CCATGAAGAGTTGAGTGATGACACGAAAGTTTTGCGTGAGGAAAAAC 420
Query 1289 AGATTTTGACAAGGGCTCTCTCAAGTCCACCTTTTGGAAATTATCGAGTTTGGTGGTCTC 1348
||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 421 AGATTTTGACACGGGCTCTCTCAAGTCCACCATTTGGAAATTATGGGGTTTGGTGGTCTC 480
Query 1349 TCGCAGACTCAAAGTATGCAGGGACAGCTTTGTTAATGAAAAAATGTTTCAAGCC-CAAG 1407
|||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 481 TCGCGGACTCGAAGTATGCAGGGACAGCTTTGTTAGTGAAAAAATGTTTCAAGCCTCGA- 539
Query 1408 AAAGTTTACTTTAACCTGGACAAATTAGCATCTAAACATGAGCCTGATGGTCGTGTTATC 1467
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 AAAGTTTACTTTAACTTGGACAAATTAGCATCTAAACATGAACCTGATGGTCGTGTTATC 599
Query 1468 TTAGCTGAATTTGAGACATTTCGCCTTTTAAATACGTATTCACCTAACAATGGTTGGAAA 1527
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 600 TTAGCTGAATTTGAGACATTTCGTCTTTTGAATACGTATTCGCCTAACAATGGTTGGAAA 659
Query 1528 GATGAGGAGAATTCGTTTCAGAGGAGAAGAAAATGGGACAAGAGGATTGTTGAGTTCCTC 1587
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 GATGAAGAGAATGCGTTTCAGAGGAGAAGAAAATGGGACAAGAGGATTGTTGAATTCCTC 719
Query 1588 AACAAAACATCTGATAAACCTCTGATATGGTGTGGCGACTTAAATGTCAGTCATGAGGAG 1647
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 720 AACAAAACATCTGATAAACCGCTAATATGGTGTGGCGACTTAAATGTCAGTCATGAGGAG 779
Query 1648 ATAGATGTTAGCCACCCAGAGTTTTTCGCAACAGCAAAGCTTAATGGTTATGTTCCTCCA 1707
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 780 ATAGATGTTAGCCACCCAGAATTTTTTGCTACAGCAAAGCTTAATGGTTATGTTCCTCCA 839
Query 1708 AACAAAGAGGACTGTGGACAGCCTGGATTTACACCATCTGAGAGACGACGCTTTGGGGCA 1767
|||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 840 AACAAAGAGGACTGCGGACAGCCTGGATTTACACCATCTGAGAGAGGACGCTTCGGGGCA 899
Query 1768 ACTATGAAAGAAGGAAGGCTTGTTGATGCATACCGGTATTTACACAAGGAGCAAGACATG 1827
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 900 ACTATAAAAGAAGGAAGGCTTGTTGATGCATACCGGTATCTACACAAGGAGCAAGAAATG 959
Query 1828 GAAAGTGGTTTCTCATGGTCGGGGAATCCCATTGGAAAGTACCGCGGAAAGAGGATGAGG 1887
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 GAAAGTGGCTTCTCATGGTCGGGGAATCCCATTGGAAAGTACCGGGGAAAGAGGATGAGG 1019
Query 1888 ATCGACTATTTTCTGGTATCTGAACAACTCAAAGACCGTATAGTTTCTTGTAAGATGCAC 1947
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATCGACTATTTTCTGGTCTCTGAACAACTCAAAGACCGTATAGTTTCTTGTAAGATGCAC 1079
Query 1948 GGTCGTGGGATAGAACTAGAAGGTTTCTATGGGAGTGATCATTGTCCGGTTACACTGGAG 2007
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1080 GGTCGTGGGATAGAACTTGAAGGTTTCCATGGGAGTGATCATTGTCCGGTTACACTCGAG 1139
Query 2008 CTTTCAAAGCCATCTTTAGAAACGGAACAGAACCAGGTTTCTAACTAA 2055
||||| |||||||||| ||||| ||||||||||||||| || ||||||
Sbjct 1140 CTTTCGAAGCCATCTTCAGAAATGGAACAGAACCAGGTGTCAAACTAA 1187
> AT3G48420.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr3:17929647-17931701 FORWARD
LENGTH=1206
Length=1206
Score = 1478 bits (800), Expect = 0.0
Identities = 900/948 (95%), Gaps = 8/948 (1%)
Strand=Plus/Plus
Query 1 ATGGCCACTGTGAAAATCTCTCTTTCCTTTGTTTCACTATCACCA---TCTTCTTCTTCT 57
||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||
Sbjct 97 ATGGCCACTGTGAAAATCTCTCTTTCCTTGGCTTCGCTATCACCATCTTCTTCTTCTTCT 156
Query 58 TCAACTCAATCTAAGCTATCTCCATCTTTCATCCCCAATGCAGCACCTTC---GCCGGCT 114
|||| |||||||||| |||| ||||||||||| |||||||| |||||| | | ||| |
Sbjct 157 TCAATTCAATCTAAGTTATCACCATCTTTCATTCCCAATGCGGCACCTGCAAAGGCGG-T 215
Query 115 -AAGTTGCGATTCAATGGTAAGTGCCTGAGAGCAAAACCAATGGTACACAGAGCATCTCG 173
||||||||||||||||| |||| |||||||||||||||||||||| ||||| |||||||
Sbjct 216 GAAGTTGCGATTCAATGGAAAGTCCCTGAGAGCAAAACCAATGGTATACAGATCATCTCG 275
Query 174 CTCCGGCGGATTCACCTGCTCTGCTTCATCTTCTCCGACGACTCTTCCCTCTGCTCTTCT 233
||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 276 CTCCGTTGGAGTCACCTGCTCTGCTTCATCTTCTCTGACGACTCTTCCCTCTGCTCTTCT 335
Query 234 CTTCGATTGCGATGGCGTTCTTGTTGATACCGAAAAGGACGGTCACAGAATCTCCTTCAA 293
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 336 CTTCGATTGCGATGGCGTTCTTGTTGATACCGAGAAGGACGGTCACAGGATCTCCTTCAA 395
Query 294 CGACACTTTCAAAGAGAGAGAATTGGATGTTACTTGGGATGTTGATTTATACGGCGAGCT 353
||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| |
Sbjct 396 CGACACTTTCAAAGAGAGAGATTTGAATGTTACGTGGGATGTTGATTTATACGGCGAGTT 455
Query 354 ACTTAAAATCGGTGGTGGTAAAGAAAGGATGACGGCGTATTTTAACAAGGTTGGTTGGCC 413
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 456 ACTTAAAATCGGTGGTGGTAAAGAAAGGATGACTGCGTATTTTAACAAGGTTGGTTGGCC 515
Query 414 AGAGAAAGCTCCTAAAGATGAAGCAGAGAGGAAAGAGTTCATAGCTGGACTTCACAAGCA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 AGAGAAAGCTCCTAAAGATGAAGCAGAGAGGAAAGAGTTCATAGCTGGACTTCACAAGCA 575
Query 474 GAAGACTGAGCTTTTCATGGTTCTCATCGAGAAAAAATTGCTTCCACTTCGACCCGGTGT 533
|||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct 576 GAAGACTGAGCTTTTCATGGTTCTTATCGAGAAAAAGCTGCTTCCGCTTCGACCCGGTGT 635
Query 534 TGCAAAGTTGGTTGATCAAGCTTTAACGAACGGAGTAAAAGTAGCTGTGTGCAGCACTTC 593
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 636 TGCAAAGTTGGTTGATCAAGCTTTAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTC 695
Query 594 AAATGAGAAGGCGGTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 AAATGAGAAGGCGGTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAA 755
Query 654 AATCAAGATATTCGCAGGAGATGTAGTCCCCAAAAAGAAACCTGACCCGGCCATCTACAA 713
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 756 AATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCAGCCATCTACAA 815
Query 714 CTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAAATGTGTTGTGGTTGAAGACAGCGC 773
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 816 CTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAAATGTGTAGTGGTTGAAGACAGCGC 875
Query 774 GATCGGGCTAGCAGCTGCAAAAGCTGCGGGAATGACTTGTATAGTCACAAAGAGTGGATA 833
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 876 GATCGGGCTAGCAGCTGCAAAAGCTGCGGGAATGACTTGTATAGTTACAAAGAGTGGATA 935
Query 834 CACGGCGGATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCATTGGAGACCCTCC 893
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 CACGGCTGATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCATTGGAGACCCTCC 995
Query 894 GGAAGAGAGATTTGATTTGGCATTCTGTGGAAGTCTTCTCCAGAAACA 941
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 996 AGAAGAGAGATTTGATTTGGCATTCTGTGGAAGTCTTCTCCGGAAACA 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101856905805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5