BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg347939

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27650.1 | Symbols:  | Tudor/PWWP/MBT superfamily protein | ...   355    2e-97


> AT5G27650.1 | Symbols:  | Tudor/PWWP/MBT superfamily protein 
| chr5:9785407-9789232 FORWARD LENGTH=3461
Length=3461

 Score =  355 bits (192),  Expect = 2e-97
 Identities = 250/279 (90%), Gaps = 0/279 (0%)
 Strand=Plus/Plus

Query  26   AGATTAAAAGCCAAGATATTTTAATTGATGAGGGTGATGAGATTTCTCAGCTTAAAGAAG  85
            ||||||||||| | ||| ||||||||||| ||| |||||||| |||| || |||||||||
Sbjct  361  AGATTAAAAGCGAGGATGTTTTAATTGATAAGGATGATGAGAGTTCTGAGGTTAAAGAAG  420

Query  86   AAAAAGAAGAAGATGATTGCTCCGATGATCAATCTAGTGAACTTGATTCTGAATTTGATG  145
            || |||||||||| ||| |||| ||||||||||||||||| |||| |||||||  |||||
Sbjct  421  AAGAAGAAGAAGAAGATGGCTCTGATGATCAATCTAGTGAGCTTGGTTCTGAAGCTGATG  480

Query  146  AGAAGGAATTGGATTCAGATTTGAAGGAAGAGAAACGAGGAGTATCTGTTTACAAATCTC  205
            |||||||||| ||||  | ||||||||||||||||  |||||| || | ||| |||||||
Sbjct  481  AGAAGGAATTAGATTTGGGTTTGAAGGAAGAGAAAAAAGGAGTTTCGGATTATAAATCTC  540

Query  206  TCTCATCTGAGTTTGATGATTATGTTGCGAGTGAGAAAATGGGTTCTGGAGTTTCGAGGG  265
            | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  541  TTTTATCTGAGTTTGATGATTATGTTGCAAGTGAGAAAATGGGTTCTGGAGTTTCGAGGG  600

Query  266  CATTGAGTTATGGGTTTGAAGTTGGAGATTTGGTTTGGG  304
            |||||||||||||||||||||||||||||||||||||||
Sbjct  601  CATTGAGTTATGGGTTTGAAGTTGGAGATTTGGTTTGGG  639


 Score =  122 bits (66),  Expect = 2e-27
 Identities = 76/80 (95%), Gaps = 3/80 (4%)
 Strand=Plus/Plus

Query  304  GCTTTTGCATCTCCTTCTGTTCGTCGTATGAGGAGGATTGATCATGTTCTTGTTGCGTTT  363
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  687  GCTTTTGCGTCTCCTTCTGTTCGTCGTATGAGGAGGATTGATCATGTTCTTGTTGCGTTT  746

Query  364  T-CAGG-GATAGTAGTTATG  381
            | | || |||||||||||||
Sbjct  747  TTC-GGTGATAGTAGTTATG  765



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5