BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347985
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48920.1 | Symbols: AtMYB45, MYB45 | myb domain protein 45 |... 1014 0.0
> AT3G48920.1 | Symbols: AtMYB45, MYB45 | myb domain protein 45
| chr3:18139392-18140561 FORWARD LENGTH=786
Length=786
Score = 1014 bits (549), Expect = 0.0
Identities = 654/705 (93%), Gaps = 5/705 (1%)
Strand=Plus/Plus
Query 1 ATGGTGTTTAAATCAGAAAAATCAAACCCGAAAATGAAATCAAAGGAGAAGCAAAGGAAA 60
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1 ATGGTGTTTAAATCAGAAAAATCAAACCGGGAAATGAAATCAAAGGAGAAGCAAAGGAAG 60
Query 61 GGATTATGGTCACCGGAGGAAGATGAGAAGCTTAGGAGTCATGTCCTCAAATATGGCCAT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGATTATGGTCACCCGAGGAAGATGAGAAGCTTAGGAGTCATGTCCTCAAATATGGCCAT 120
Query 121 GGATGCTGGAGCACCATTCCTATTCAAGCTGGATTGCAGAGGAATGGGAAGAGTTGTAGA 180
||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGATGCTGGAGTACTATTCCTCTTCAAGCTGGATTGCAGAGGAATGGGAAGAGTTGTAGA 180
Query 181 TTAAGGTGGGTTAATTATTTAAGACCTGGACTTAAGAAGTCTTTATTCACTAAAGAAGAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 TTAAGGTGGGTTAATTATTTAAGACCTGGACTTAAGAAGTCTTTATTCACTAAACAAGAG 240
Query 241 GAAACTATACTTCTCTCACTCCATTCCATGTTGGGTAACAAATGGTCACAGATATCGAAA 300
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GAAACTATACTTCTTTCACTTCATTCCATGTTGGGTAACAAATGGTCTCAGATATCGAAA 300
Query 301 TTTTTACCAGGCAGAACCGACAACGAAATCAAAAACTATTGGCATTCCAATCTAAAGAAG 360
|| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 301 TTCTTACCAGGAAGAACCGACAACGAGATCAAAAACTATTGGCATTCTAATCTAAAGAAG 360
Query 361 GGTGTTGTAACTTTGACACCACATGAAACCACAAGAACCCCTCAAACACCTTCAATCACA 420
||||| |||||||| || |||||||||||||| || | ||||||||||| |||||||
Sbjct 361 GGTGT---AACTTTGAAACAACATGAAACCACAAAAAAACATCAAACACCTTTAATCACA 417
Query 421 AACTCACTTGAGGCCTTGCAGAGTACAACTGAAAGATCTGCTTCATCTATCAATGTCGCA 480
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 418 AACTCACTTGAGGCCTTGCAGAGTTCAACTGAAAGATCTTCTTCATCTATCAATGTCGGA 477
Query 481 GAAACATTTAATGCTCAAATCTCAAGCTTTTCGCCAAGTCTCGTGTTCTCTGATTGGTTA 540
||||| | ||||||||||| ||||||||||||||||| |||||||||||| || ||||||
Sbjct 478 GAAACGTCTAATGCTCAAACCTCAAGCTTTTCGCCAAATCTCGTGTTCTCGGAATGGTTA 537
Query 541 GATCACAGTTTGCTTATGGATCAGTCAACTCAAAAGTCTAGCTTTGTTCAAAACCTTGTT 600
||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||
Sbjct 538 GATCATAGTTTGCTTATGGATCAGTCACCTCAAAAGTCTAGCTATGTTCAAAATCTTGTT 597
Query 601 GTACCGGAAGAGAGAGGATTCATTGGATTATGTGGCCCGT-GTTATTTGGAAAACAACCC 659
|||||||||||||||||||||||||| ||||||||| | ||||||||| |||| || |
Sbjct 598 TTACCGGAAGAGAGAGGATTCATTGGACCATGTGGCCC-TCGTTATTTGGGAAACGACTC 656
Query 660 TTTGCCTGATTTCGTACCAACTTCAGATTTTTTGTTCGAGGATGA 704
||||||||||||||| |||| |||||| |||||||| || |||||
Sbjct 657 TTTGCCTGATTTCGTGCCAAATTCAGAATTTTTGTTGGATGATGA 701
Score = 80.5 bits (43), Expect = 2e-14
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand=Plus/Plus
Query 705 TACTTCATTTT-ATGACAATTTTTTGATCGGTAGTCTCATCAACGAGCTACGACCAATGT 763
||||||||||| | ||||| |||||| ||| | |||||||||||||||||||||||||||
Sbjct 726 TACTTCATTTTCA-GACAACTTTTTGTTCGATGGTCTCATCAACGAGCTACGACCAATGT 784
Query 764 AA 765
||
Sbjct 785 AA 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5