BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347994
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49010.1 | Symbols: ATBBC1, BBC1, RSU2 | breast basic conser... 992 0.0
AT3G48960.1 | Symbols: | Ribosomal protein L13e family protein... 693 0.0
AT5G23900.1 | Symbols: | Ribosomal protein L13e family protein... 562 1e-159
> AT3G49010.1 | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved
1 | chr3:18166769-18168580 REVERSE LENGTH=891
Length=891
Score = 992 bits (537), Expect = 0.0
Identities = 593/621 (95%), Gaps = 0/621 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCACAACAATGTCATCCCTAATGGTCACTTCAAAAAGCACTGGCAGAACTATGTA 60
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 69 ATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTC 128
Query 61 AAGACATGGTTTAACCAGCCTGCTAGGAAAACCAGAAGAAGAATTGCGAGGCAAAAGAAG 120
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 129 AAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGCGAGGCAAAAGAAG 188
Query 121 GCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTCAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 GCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTCAG 248
Query 181 ACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 ACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG 308
Query 241 GCTGCTGGTATCCCAAAGAAGTTGGCTCCTACAATCGGTATTGCTGTTGACCATCGTCGC 300
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 309 GCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACCATCGTCGC 368
Query 301 AAGAACCGATCTTTGGAGGGTCTTCAAACCAATGTCCAGAGGCTGAAAACCTACAAGACT 360
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 369 AAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGAGGCTGAAAACCTACAAGACC 428
Query 361 AAGTTGGTCATCTTCCCGCGTCGTGCTCGCAAGGTTAAGGCTGGTGACTCTACACCAGAA 420
||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 429 AAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGGCTGGTGACTCTACACCAGAA 488
Query 421 GAGTTGGCTAATGCTACCCAAGTTCAAGGAGACTACTTGCCTATTGTACGCGAGAAGCCA 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 489 GAGTTGGCTAATGCTACCCAAGTTCAAGGAGACTACTTGCCTATTGTACGTGAGAAGCCT 548
Query 481 ACCATGGAGCTCGTCAAGCTGACTTCAGAAATGAAGTCCTTCAAGGCGTATGATAAGATA 540
|||||||| ||||||||||||||||||||||||||||| |||||||| | ||| ||||||
Sbjct 549 ACCATGGAACTCGTCAAGCTGACTTCAGAAATGAAGTCTTTCAAGGCTTTTGACAAGATA 608
Query 541 CGTCTTGAGCGCACGAACAAGAGACATGCTGGTGCTAGAGCCAAGAGAGCCTCCGAGGCT 600
|| ||||||||||| |||||||| ||||| || |||||||||||||||||| | ||||||
Sbjct 609 CGCCTTGAGCGCACTAACAAGAGGCATGCCGGAGCTAGAGCCAAGAGAGCCGCAGAGGCT 668
Query 601 GAGAAAGAAGAGAAGAAGTGA 621
|||||||||||||||||||||
Sbjct 669 GAGAAAGAAGAGAAGAAGTGA 689
> AT3G48960.1 | Symbols: | Ribosomal protein L13e family protein
| chr3:18150444-18151412 REVERSE LENGTH=621
Length=621
Score = 693 bits (375), Expect = 0.0
Identities = 546/628 (87%), Gaps = 14/628 (2%)
Strand=Plus/Plus
Query 1 ATGAAGCACAACAATGTCATCCCTAATGGTCACTTCAAAAAGCACTGGCAGAACTATGT- 59
||||||||||| ||||| ||||| |||||||||||||||||| | ||| | ||||||||
Sbjct 1 ATGAAGCACAATAATGTTATCCCCAATGGTCACTTCAAAAAGAAGTGGGAAAACTATGTC 60
Query 60 AAAGACATGGTTTAACCAGCCTGCTAGGAAAACCAGAAGAAGAATTGCGAGGCAAAAGAA 119
||| || | ||| ||||| ||||| | ||||||||||||||||||||||||||| || ||
Sbjct 61 AAA-ACTTCGTTCAACCAACCTGCCATGAAAACCAGAAGAAGAATTGCGAGGCAGAATAA 119
Query 120 GGCTGTGAAGATC-TTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTC 178
||||||||||||| ||||| ||||| ||| |||||||| |||| |||||||| |||| ||
Sbjct 120 GGCTGTGAAGATCTTTCCC-CGTCCCACTGCTGGACCTATCCGACCTGTTGTACATGCTC 178
Query 179 AGACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCA 238
||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct 179 AGACTCTTACGTACAACATGAAAGTCAGAGCCGGTAAAGGATTCACTCTTGAAGAGCTAA 238
Query 239 AGGCTGCTGGTATCCCAAAGAAGTTGGCTCCTACAATCGGTATTGCTGTTGACCATCGTC 298
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 239 AGGCTGCTGGTATCCCCAAGAAGTTGGCTCCTACAATCGGTATTTCTGTTGACCATCATC 298
Query 299 GCAAGAACCGATCTTTGGAGGGTCTTCAAACCAATGTCCAGAGGCTGAAAACCTACAAGA 358
|||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 299 GCAAGAACCGGTCTTTGGAGGGTTTTCAAACCAACGTCCAGAGGCTGAAAACCTACAAGG 358
Query 359 CTAAGTTGGTCATCTTCCCGCG-TCGTGCTCGCAA-GGTTAAGGCTGGTGACTCTACACC 416
|||||||||| ||||||||||| | |||| || || ||| |||| |||||| ||| |||
Sbjct 359 CTAAGTTGGTTATCTTCCCGCGCT-GTGCCCG-AACGGTCAAGGTTGGTGATTCTGCACA 416
Query 417 AGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGAGA-CTACTTGCCTATTGTACGCGAGA 475
| |||||||||| ||||| || ||||| |||| ||| | || ||||||| || || || |
Sbjct 417 ACAAGAGTTGGCCAATGCAACACAAGTCCAAGTAGATC-ACATGCCTATCGTTCGTGA-A 474
Query 476 A-GCCAACCATGGAGCTCGTCAAGCTGACTTCAGAAATGAAGTCCTTCAAGGCGTATGAT 534
| |||||| |||||||| || |||||||| || || ||||| | ||||| || |||||
Sbjct 475 ATGCCAACAATGGAGCTTGTGAAGCTGACATCTGACATGAAATTGTTCAATGCTTATGAC 534
Query 535 AAGATACGTCTTGAGCGCACGAACAAGAGACATGCTGGTGCTAGAGCCAAGAGAGCCTCC 594
||||| ||||| ||| ||| ||||||||||||||||||| ||||||||||||||| | |
Sbjct 535 AAGATCCGTCTAGAGGGCATAAACAAGAGACATGCTGGTGTTAGAGCCAAGAGAGC-TGC 593
Query 595 -GAGGCTGAGAAAGAAGAGAAGAAGTGA 621
|||||||||||||||||||||||||||
Sbjct 594 TGAGGCTGAGAAAGAAGAGAAGAAGTGA 621
> AT5G23900.1 | Symbols: | Ribosomal protein L13e family protein
| chr5:8063985-8065523 REVERSE LENGTH=856
Length=856
Score = 562 bits (304), Expect = 1e-159
Identities = 524/629 (83%), Gaps = 20/629 (3%)
Strand=Plus/Plus
Query 1 ATGAAGCACAACAATGTCATCCCTAATGGT--CAC-TTCAAAAAGCACTGGCAGAACTAT 57
|||||||||||||| || ||||| | | | ||| ||| |||||||||||||| |||
Sbjct 45 ATGAAGCACAACAACGTTATCCC-GA-GCTCACACTTTC-GCAAGCACTGGCAGAATTAT 101
Query 58 GTAAAGACATGGTTTAACCAGCCTGCTAGGAAAACCAGAAGAAGAATTGCGAGGCAAAAG 117
|| ||||| ||||||||||||||||| ||||| || || ||| | |||| || || |||
Sbjct 102 GTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGCTAGACAGAAG 161
Query 118 AAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGT 177
|||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||
Sbjct 162 AAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATGGT 221
Query 178 CAGACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTC 237
||||| ||||||||||||||||| || ||| | || |||||||||||||||||||||||
Sbjct 222 CAGACACTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGCTT 281
Query 238 AAGGCTGCTGGTATCCCAAAGAAGTTGGCTCCTACAATCGGTATTGCTGTTGACCATCGT 297
|||| ||||||||||||||||||||||||||| |||||||| ||| ||||||| || ||
Sbjct 282 AAGGTTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCTGTTGATCACCGA 341
Query 298 CGCAAGAACCGATCTTTGGAGGGTCTTCAAACCAATGTCCAGAGGCTGAAA-ACCTACAA 356
||||||||||| ||||||||||||||||| |||||||||| ||| | ||| || |||||
Sbjct 342 CGCAAGAACCGTTCTTTGGAGGGTCTTCAGTCCAATGTCCAAAGGTT-AAAGACTTACAA 400
Query 357 GACTAAGTTGGTCATCTTCCCGCGTCGTGCTCG-CAAGGTTAAGGCTGGTGACTCTACAC 415
| |||||||||| | ||||| || ||| | || |||| | ||||||||||| ||||| |
Sbjct 401 GGCTAAGTTGGTGGTGTTCCCTCGCCGTTCCCGTCAAG-TCAAGGCTGGTGATTCTACTC 459
Query 416 CAGAAGAG-TTGGCTAATGCTACCCAAGTTCAAGGAGACTACTTGCCTATTGT-ACGCGA 473
|||| ||| ||| | |||||||| ||||||||||| || ||| |||| |||| | | |
Sbjct 460 CAGAGGAGCTTGCC-AATGCTACTCAAGTTCAAGGTGATTACATGCCAATTGCCA-GTGT 517
Query 474 GAAGCCAACCATGGAGCTCGTCAAGCTGACTTCAGAAATGAAGTCCTTCAAGGCGTATGA 533
||| || | |||||||| || ||||||||| |||| ||||| | |||||||| || ||
Sbjct 518 CAAGGCAGCTATGGAGCTAGTTAAGCTGACTGCAGATTTGAAGGCGTTCAAGGCTTACGA 577
Query 534 TAAGATACGTCTTG-AGCGCACGAACA-AGAGACATGCTGGTGCTAGAGCCAAGAGAGCC 591
|||||| ||| ||| ||||||| ||| | | ||||||||||| ||||||||||| ||
Sbjct 578 TAAGATTCGT-TTGGAGCGCACAAACGCAC-GTCATGCTGGTGCCAGAGCCAAGAGGGC- 634
Query 592 T-CCGAGGCTGAGAAAGAAGAGAAGAAGT 619
| |||||||||||||||||||||||||||
Sbjct 635 TGCCGAGGCTGAGAAAGAAGAGAAGAAGT 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5