BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347996
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49055.1 | Symbols: | unknown protein; EXPRESSED IN: cotyle... 1831 0.0
> AT3G49055.1 | Symbols: | unknown protein; EXPRESSED IN: cotyledon;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G24560.1); Has 52205 Blast hits to 29376 proteins
in 1994 species: Archae - 873; Bacteria - 6150; Metazoa
- 27099; Fungi - 3784; Plants - 3062; Viruses - 130; Other
Eukaryotes - 11107 (source: NCBI BLink). | chr3:18185166-18186968
REVERSE LENGTH=1443
Length=1443
Score = 1831 bits (991), Expect = 0.0
Identities = 1312/1463 (90%), Gaps = 37/1463 (3%)
Strand=Plus/Plus
Query 1 ATGGAT-TTCACAGATACCGGAATCTACCGCTCGGATTCTGCTGCCTCCGATCAAGACCA 59
|||||| || | ||||||||||||| ||||||||||| || || |||||||||||||||
Sbjct 1 ATGGATGTT-AAAGATACCGGAATCAACCGCTCGGATACTCCTATCTCCGATCAAGACCA 59
Query 60 TGACCTCCGACAATGTAATAATCACTATTCGTTAGACTCTGACTTTCTCCGTCTCCGAAG 119
|||| | |||||||| ||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 60 TGACTTTCGACAATG---GAATCACTCTTCGTTAGACTCTAACTTTCTCAGTCTCCGAAG 116
Query 120 TCAGATATTCGAAGGGAGTTATCGGAGAACTGATTTGATTAGAGTGAACCTTGAGCTT-T 178
||||||||||||| |||||||||||||||||||||||| |||||||||| |||| || |
Sbjct 117 CCAGATATTCGAAGCGAGTTATCGGAGAACTGATTTGATAAGAGTGAACCATGAG-TTGT 175
Query 179 CCCACGAGAGAGATGCACTTAGGCGAAGAAATCGTGAGCTTGAAGCTGGAATTTTGGAGG 238
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 176 TCCACGAGAGAGATGCACTTAGGCGAAGAAATAGTGAGCTTGAAGCTGGAATTTTGGAAG 235
Query 239 CA-GAGATGATTAGAAAGGAAATGAAGAGAGATATGGAAGTTTCTAAAGAAAGAGT-AGG 296
| | ||||||||| ||||||||||||||||| |||||||||||||||||| || | |
Sbjct 236 -AGGTTATGATTAGAGAGGAAATGAAGAGAGATCTGGAAGTTTCTAAAGAAACTGTCA-G 293
Query 297 TGAATCGGATGGAGAGACGAAGGAGAAATCCAAATTACTATCGGATATTTCGGATTCCGT 356
||||| ||| |||||| ||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 294 TGAATTGGAAGGAGAGGCGAAGGAGAAAACCAAATTACTATCGGATATTGCGGATTATGT 353
Query 357 ACGATCTATGGAAGACCGCTTGTCGAAATCGATCCGCTGTTTAAACG-A-AG-A-G---- 408
||||||||||||||| ||||||||||||| ||||| |||||||||| | || | |
Sbjct 354 ACGATCTATGGAAGATCGCTTGTCGAAATTAATCCGATGTTTAAACGAAGAGAATGTTCC 413
Query 409 -GAAGAGGAAAGAGGGGGGAAACTGGAAAGAGAGGAATATAATTTCATGTCAATATTGGA 467
||||||||||||||| | |||||||||| | |||||||||||| || || || |||||
Sbjct 414 AGAAGAGGAAAGAGGGAGAAAACTGGAAACAAAGGAATATAATTCCAAATCTATTTTGGA 473
Query 468 GTTAGTCAAGGAGGTTGAAACGAAGTTAAAGACGTT-CATGGAATCAATGGAGAAGAAGA 526
||||||||||||||||| |||||||||| ||||||| || |||||| | | |||||||||
Sbjct 474 GTTAGTCAAGGAGGTTGTAACGAAGTTAGAGACGTTCCA-GGAATCTACGAAGAAGAAGA 532
Query 527 AGCTAGCGCTAAGTAGAAGTGTGGAGCTCTTGGAAGAGGAGAACAGAGATATCAGTATCT 586
|| | | ||||||||||||||||||| |||||||||||||||| |||||||||| | |||
Sbjct 533 AGATGGAGCTAAGTAGAAGTGTGGAGTTCTTGGAAGAGGAGAATAGAGATATCAATGTCT 592
Query 587 TGTTAAGGGCTGCTTTGTCTGAGAAACAAACTGCAGAGAAGCAATTGAAAGAGATGAATG 646
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGTTAAGAGCTGCTTTGTTTGAGAAACAAACTGCAGAGAAGCAATTGAAAGAGATGAATG 652
Query 647 AGCAGAAGGGATCGGCTTTGCTGCAAATCGCAGGACGAGGATTGCAGAGAATAGGTTTTG 706
| |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 653 ATCAGAAGGGATTGGCTTTGCTGCAAATCGCAGGAAGAGGGTTGCAGAGAATAGGTTTTG 712
Query 707 GTTTCGGGTTCGGGGATTCTGTAGAGGAGAGCTCAGAAG-CGGGAAATCTCGCCAAGGAC 765
|||| ||||| || || || |||||||||||||||| || |||||||| ||| | |
Sbjct 713 GTTTTGGGTTAGGAGAATCAGTAGAGGAGAGCTCAG-AGACGGGAAATATCG-C---G-- 765
Query 766 AAGGAAAGAGAAGAAGAGAATGGTGTGGTTATAGCAATAGAGAACACTATGAAGAAGCTA 825
|| | | |||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 766 AATG--A-AGAAGAAGAGAATGGTGTGGTTATAGCAATAGAGAAAACAATGAAGAAACTG 822
Query 826 CGGCAAGAGGTTTCTCAGCTGAAGATATCTTTGGAGGAATCAAGGTTAGAAGAAGAGCGA 885
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 823 CGGCAAGAGGTTTCTCAGCTGAAAATATCTTTGGAGGAATCAAGGTTAGAAGAAGTGGGG 882
Query 886 TTGAAGAAATTTACAGAGGAACAAGCTCAGAAAATAGCAGAGAACACGGTGTATATCGAC 945
|||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 883 TTGAGGAAAGTTACAGAGGAACAAGCTCAGAAATTAGCAGAGAACACGGTGTATATCAAC 942
Query 946 AATCTGCAAAATCAAGAGATGTTTCTTGCTCAAAACGTGGAAGAGCTAGTGAAAGTAATA 1005
|| |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||
Sbjct 943 AAGCTGCAAAATCAAGAGAAGTTTCTTGCTCAAAACGTCGAAGAGCTAGTGAAAGCAATA 1002
Query 1006 AGAGAAGCTGAATCAGAAGTAAGTAGATGGAGAGAAGCTTGTGAGCTAGAAGTTGAAGCA 1065
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 AGAGAAGCAGAATCAGAAGTAAGTAGATGGAGAGAAGCTTGTGAGCTAGAAGTTGAAGCA 1062
Query 1066 GGGCAGCGCGAAGTGGAAGTACGCGATCAACTCATAGCGGTTTTAAAGACAGAGGTAGAG 1125
|||||||||||||| |||||||| ||||| |||||||||||| ||||| ||||||| |||
Sbjct 1063 GGGCAGCGCGAAGTCGAAGTACGGGATCAGCTCATAGCGGTTCTAAAGTCAGAGGTTGAG 1122
Query 1126 AAGCTGAGATCAGCCTT-GACCATATCAGA-GGGAAAACTAAAATTGAAAGAAGAATTGG 1183
|||||||||||||| || | ||| |||||| |||||| |||||| |||||||||||||||
Sbjct 1123 AAGCTGAGATCAGCATTAG-CCAGATCAGAAGGGAAA-CTAAAACTGAAAGAAGAATTGG 1180
Query 1184 CTAAAGCCGCAATGGTAGCAGAAGAAGCAGCTGAGAAATCTCTGCGGTTGTCCGAGAGAA 1243
| ||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 1181 CCAAAGCTGCAATGGTAGCAGAAGAAGCAGCTGAGAAATCGCTGCGATTGGCCGAGAGAA 1240
Query 1244 GAATAGCTCAACTTCTCAGCCGCATTGAAAATCTCTACCGCCAATTGGAAGAAGCAGAGT 1303
|||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1241 GAATAGCTCAACTTCTTAGCCGTATTGAACATCTCTACCGCCAATTGGAAGAAGCAGAGT 1300
Query 1304 CTACAGAACGCAGACGCGGAAAGTTTAGGTATGTTTGGTGTTGGCCGATGTGGCGCTTGC 1363
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1301 CTACAGAACGCAGACGTGGAAAGTTCAGGTATGTTTGGTGTTGGCCGATGTGGCGTTTTC 1360
Query 1364 CTACTGCTGCTTCTGCTGCTGCGACCGCTAGTGGTGGTTCTTCATATACAAGCAACAGAG 1423
|||| ||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1361 CTACCGCTGCTTCTACTGCTGCGACCGCTACTGGAAGTTCTTCATATACAAGCAACAGAG 1420
Query 1424 AATTGTTACGATATGATGCGTGA 1446
||||||||||||||||||||||
Sbjct 1421 CATTGTTACGATATGATGCGTGA 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5