BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348000
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54660.1 | Symbols: | pseudogene, similar to vetispiradiene... 652 0.0
> AT1G54660.1 | Symbols: | pseudogene, similar to vetispiradiene
synthase, blastp match of 54% identity and 3.0e-79 P-value
to GP|5360685|dbj|BAA82108.1||AB022719 vetispiradiene synthase
{Solanum tuberosum} | chr1:20408413-20411449 REVERSE LENGTH=3037
Length=3037
Score = 652 bits (353), Expect = 0.0
Identities = 369/377 (98%), Gaps = 0/377 (0%)
Strand=Plus/Plus
Query 400 GATGTGTTTAACAACTTCAAGAATAAGGATGGAAAGTTCAAGGAGCACCTAGCTGAGGAT 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 GATGTGTTTAACAACTTCAAGAATAAGGATGGAAAGTTCAAGGAGCACCTAGCTGAGGAT 925
Query 460 GCAAGAGGTCTTTTATGCCTTTATGAAGCTGCACATTGGAGCACCCATGGCGAAGACATT 519
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 926 GCAAGAGGTCTTTTATGCCTTTATGAAGCTGCACATTGGAGCACCCATGGTGAAGACATT 985
Query 520 CTCGATGAAGCTCTTGCTTTCTCTAGGTATCATTTGGAAGGACTGACTGATCAATCTAGT 579
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 986 CTCGATGAAGCTCTTGCTTTCTCTAGGTCTCATTTGGAAGGACTGGCTGATCAATCTAGT 1045
Query 580 CCACATATGTCCATCCGCATTAAAAATGCCCTCAAACATGCATACCCTAGGGGTATATCA 639
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 CCACCTATGTCCATCCGCATTAAAAATGCCCTCAAACATGCATACCCTAGGGGTATATCA 1105
Query 640 AGGATAGAGACACGGCAATATATCTCATACTATGAAGAAGAAGATCTGCACGACCAAACC 699
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 AGGATAGAGACACGACAATATATCTCATACTATGAAGAAGAAGATCTGCACGACCAAACC 1165
Query 700 TTGCTTGAATTTGCTAAGATAGATTTCAATCTTCTGAAAATGTTGCACCGCAAAGAGCTT 759
||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1166 TTGCTAGAATTTGCTAAGATAGATTTCAATCTTCTGCAAATTTTGCACCGCAAAGAGCTT 1225
Query 760 TGCCAAGTCTTCAGGTG 776
|||||||||||||||||
Sbjct 1226 TGCCAAGTCTTCAGGTG 1242
Score = 536 bits (290), Expect = 2e-151
Identities = 339/361 (94%), Gaps = 9/361 (2%)
Strand=Plus/Plus
Query 772 AGGTGGTACTCAAGTCTAGAGCTAGACTTGAAACTACCATATGCAAGGAATAGGACTGTC 831
||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1337 AGGTGGTACTCAAATCTAGAGCTCGACTTGAAAGTACCATATGCAAGGAATAGGACTGTC 1396
Query 832 GAAAGCTACTTGTGGGCTGTTGGAGCATA-TTCCGAGCCCCGATATTCTCAAGCAAGGAT 890
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1397 GAAAGCTACTTGTGGGCTGTTGGAGCATACTT-TGAGCCCCGATATTCTCAAGCAAGGAT 1455
Query 891 TAGATTGGCCATTGTTGTTATCTTATTGACTCTTGTTGATGATACATACGATGCATATGG 950
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1456 TAGATTGGCCATTGTTGTTATCTTATTGACTCTTGTTGATGATACGTACGATGCATTTGG 1515
Query 951 CACGATTGAGGAACTCGAACCATTTACAAATGCATTGATTATGTGGAATTCTAGCGGCAT 1010
||||||||||||||||||||||||| || | | ||||||||||||| ||||||||||
Sbjct 1516 CACGATTGAGGAACTCGAACCATTT-CA--T---T-GATTATGTGGAATCCTAGCGGCAT 1568
Query 1011 AGAAGGGCTCCCGGAGAGTATGAAGTATCTTCATCATGTGGTGTTAGATTTCTATGGAAA 1070
|||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 1569 AGAAGGGCTCCCGGAGAGCATGAGGTATCTTCATCATGTGGTGTTAGATTTCTACGGAAA 1628
Query 1071 ACTTGAGGAGGATATGGAGAGGGAAGGCAGGTCCGGATGCGGCCTTCTCGCTAAAAAATC 1130
||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||
Sbjct 1629 ACTTGAGGAGGATATGGAGAGGGAAGGAAGGTCAGGATGCGGCCTTTTCGCTAAAAAATC 1688
Query 1131 G 1131
|
Sbjct 1689 G 1689
Score = 453 bits (245), Expect = 2e-126
Identities = 282/299 (94%), Gaps = 5/299 (2%)
Strand=Plus/Plus
Query 1375 TGCGAGTTTGAACATAAGAGAAAGCACGTAGGAACATCCATTGATTGTTATATGAAGCAA 1434
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2742 TGC-AGTTTGAACATAAGAGAAAGCACGTAGGAACATCCATTGATTGTTACATGAAGCAA 2800
Query 1435 TTTGGTGTTTCATGGGAAAACGCGGAAGAAGAGATCAAAATCATGGCATTGGATTCATGG 1494
| |||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2801 TATGGTATTTCATGGGAAAAAGCCGAAGAAGAGATCAAAATCATGGCATTGGATTCATGG 2860
Query 1495 AAGAGTCTTAATCAAGAACTTATGACGAGAGATCACTCTTTTCCTTTCCCTATCGTCATG 1554
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 2861 AAGAGTCTTAATCAAGAACTGATGACGAGAGATCACTCTTTTGCTTTCCCTATCGTCATG 2920
Query 1555 CGATTCCTAAACCTCTCGAGGGTCGTCGAAG-TTTTCTACAAAGACACAGACATTTTCAC 1613
||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||| ||
Sbjct 2921 CGATTCCTAAACCTCTCGAGGGTCGTC-AAGGTTTTGTACAAAGACACTGACATTTTTAC 2979
Query 1614 GTATCCTGAGTTGATGAAACATCACGTGGTTTCTTTATTCCTTAACAAGA-TATCTATT 1671
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2980 ACATCCTGAGTTGATGAAACATCACGTGGTTTCTTTATTCCTTAACA-GAATATCTATT 3037
Score = 451 bits (244), Expect = 9e-126
Identities = 269/281 (96%), Gaps = 1/281 (0%)
Strand=Plus/Plus
Query 120 GGAGAGTGAGATAAACGAAGAGAAGCTGAGTTCACTAAAGGAAACCGTAAGAGAATTGTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 192 GGAGAGTGAGATAAACGAAGAGAAGCTGAGTTCACTAAAGGAAACCGTAAGAGGATTGTT 251
Query 180 AATGGCTTCAAAAGAAGAGCCGATAGAGAACATCAAATTAATTGATGCTCTTTGTCGCCT 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 252 AATGGCTTCAAAAGAAGAGCCGATAGAGAACATCAAATTCATTGATGCTCTTTGTCGCCT 311
Query 240 TGGTATCTCCTACCACTTTGAAGGAGAAATCTTCGCGCAGTTAGAGACGATGTTTGGTTG 299
|||| | |||||||||||||||| ||| |||||| ||||||||||||||||||||||| |
Sbjct 312 TGGTGTTTCCTACCACTTTGAAGTAGACATCTTCACGCAGTTAGAGACGATGTTTGGT-G 370
Query 300 TCATGGTTTTATGCAGATGATAAGAGACAATGAGTTCGATTTATACACCGTCTCTCTTGT 359
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 371 TCATGGTTTTATGCAGATGATAAGAGGCAATGAGTTCGATTTATACACCGTCTCCCTCGT 430
Query 360 CTTCCAAGTTTTTAGACAATTTGGCTATAAACTTGGTGTCG 400
||||||| |||||||||||||||||||||||||||||||||
Sbjct 431 CTTCCAAATTTTTAGACAATTTGGCTATAAACTTGGTGTCG 471
Score = 446 bits (241), Expect = 4e-124
Identities = 254/260 (98%), Gaps = 1/260 (0%)
Strand=Plus/Plus
Query 1122 TAAAAAATC-GATGATTGTAACTGCTAAAGCCTATCTTCAAGAGGCAAAATGGTTGAGTG 1180
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1808 TAATAAATCAGATGATTGTAACTGCTAAAGCCTATCTTCAAGAGGCAAAATGGTTGAGTG 1867
Query 1181 AAGACTATGTGGCAACATTTGACGAGTACAAAGAAAACGGAGTTTATTCATCGAGCTACT 1240
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1868 AAGACTTTGTGGCAACATTTGACGAGTACAAAGAGAACGGAGTTTATTCATCGAGCTACT 1927
Query 1241 TAGCTCTGTTAACAGGATCCTTTCTAGGAATGGTGGATGAAGGCACACTTGATGTGTTTG 1300
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1928 TAGCTCTGTTAACAGGATCCTTTCTAGGGATGGTGGATGAAGGCACCCTTGATGTGTTTG 1987
Query 1301 AATGGTTAAGCACTTTCCCACCCCTTCTTGTGACTTCTGCACTAATAGGCCGTCTCTGTG 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1988 AATGGTTAAGCACTTTCCCACCCCTTCTTGTGACTTCTGCACTAATAGGCCGTCTCTGTG 2047
Query 1361 GTGACATTGCTAGTTGCGAG 1380
||||||||||||||||||||
Sbjct 2048 GTGACATTGCTAGTTGCGAG 2067
Score = 117 bits (63), Expect = 4e-25
Identities = 76/82 (93%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 41 AAGAAATTA-ATCGGCCATTAGCCGATTTTCCGGTGAATATATGGGAAGATCCCTTGATC 99
|||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGAAA-TATATCGGCCATTAGCGGATTTTCCGGTGAATATATGGGAAGATCCCTTGATC 59
Query 100 TCTTTTCCTGTTTTAGACCCGG 121
|||||| ||||||| || ||||
Sbjct 60 TCTTTTTCTGTTTTGGATCCGG 81
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82730498160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5