BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg348000 Length=1674 Score E Sequences producing significant alignments: (Bits) Value AT1G54660.1 | Symbols: | pseudogene, similar to vetispiradiene... 652 0.0 > AT1G54660.1 | Symbols: | pseudogene, similar to vetispiradiene synthase, blastp match of 54% identity and 3.0e-79 P-value to GP|5360685|dbj|BAA82108.1||AB022719 vetispiradiene synthase {Solanum tuberosum} | chr1:20408413-20411449 REVERSE LENGTH=3037 Length=3037 Score = 652 bits (353), Expect = 0.0 Identities = 369/377 (98%), Gaps = 0/377 (0%) Strand=Plus/Plus Query 400 GATGTGTTTAACAACTTCAAGAATAAGGATGGAAAGTTCAAGGAGCACCTAGCTGAGGAT 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 866 GATGTGTTTAACAACTTCAAGAATAAGGATGGAAAGTTCAAGGAGCACCTAGCTGAGGAT 925 Query 460 GCAAGAGGTCTTTTATGCCTTTATGAAGCTGCACATTGGAGCACCCATGGCGAAGACATT 519 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 926 GCAAGAGGTCTTTTATGCCTTTATGAAGCTGCACATTGGAGCACCCATGGTGAAGACATT 985 Query 520 CTCGATGAAGCTCTTGCTTTCTCTAGGTATCATTTGGAAGGACTGACTGATCAATCTAGT 579 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 986 CTCGATGAAGCTCTTGCTTTCTCTAGGTCTCATTTGGAAGGACTGGCTGATCAATCTAGT 1045 Query 580 CCACATATGTCCATCCGCATTAAAAATGCCCTCAAACATGCATACCCTAGGGGTATATCA 639 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1046 CCACCTATGTCCATCCGCATTAAAAATGCCCTCAAACATGCATACCCTAGGGGTATATCA 1105 Query 640 AGGATAGAGACACGGCAATATATCTCATACTATGAAGAAGAAGATCTGCACGACCAAACC 699 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1106 AGGATAGAGACACGACAATATATCTCATACTATGAAGAAGAAGATCTGCACGACCAAACC 1165 Query 700 TTGCTTGAATTTGCTAAGATAGATTTCAATCTTCTGAAAATGTTGCACCGCAAAGAGCTT 759 ||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 1166 TTGCTAGAATTTGCTAAGATAGATTTCAATCTTCTGCAAATTTTGCACCGCAAAGAGCTT 1225 Query 760 TGCCAAGTCTTCAGGTG 776 ||||||||||||||||| Sbjct 1226 TGCCAAGTCTTCAGGTG 1242 Score = 536 bits (290), Expect = 2e-151 Identities = 339/361 (94%), Gaps = 9/361 (2%) Strand=Plus/Plus Query 772 AGGTGGTACTCAAGTCTAGAGCTAGACTTGAAACTACCATATGCAAGGAATAGGACTGTC 831 ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 1337 AGGTGGTACTCAAATCTAGAGCTCGACTTGAAAGTACCATATGCAAGGAATAGGACTGTC 1396 Query 832 GAAAGCTACTTGTGGGCTGTTGGAGCATA-TTCCGAGCCCCGATATTCTCAAGCAAGGAT 890 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1397 GAAAGCTACTTGTGGGCTGTTGGAGCATACTT-TGAGCCCCGATATTCTCAAGCAAGGAT 1455 Query 891 TAGATTGGCCATTGTTGTTATCTTATTGACTCTTGTTGATGATACATACGATGCATATGG 950 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 1456 TAGATTGGCCATTGTTGTTATCTTATTGACTCTTGTTGATGATACGTACGATGCATTTGG 1515 Query 951 CACGATTGAGGAACTCGAACCATTTACAAATGCATTGATTATGTGGAATTCTAGCGGCAT 1010 ||||||||||||||||||||||||| || | | ||||||||||||| |||||||||| Sbjct 1516 CACGATTGAGGAACTCGAACCATTT-CA--T---T-GATTATGTGGAATCCTAGCGGCAT 1568 Query 1011 AGAAGGGCTCCCGGAGAGTATGAAGTATCTTCATCATGTGGTGTTAGATTTCTATGGAAA 1070 |||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| Sbjct 1569 AGAAGGGCTCCCGGAGAGCATGAGGTATCTTCATCATGTGGTGTTAGATTTCTACGGAAA 1628 Query 1071 ACTTGAGGAGGATATGGAGAGGGAAGGCAGGTCCGGATGCGGCCTTCTCGCTAAAAAATC 1130 ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| Sbjct 1629 ACTTGAGGAGGATATGGAGAGGGAAGGAAGGTCAGGATGCGGCCTTTTCGCTAAAAAATC 1688 Query 1131 G 1131 | Sbjct 1689 G 1689 Score = 453 bits (245), Expect = 2e-126 Identities = 282/299 (94%), Gaps = 5/299 (2%) Strand=Plus/Plus Query 1375 TGCGAGTTTGAACATAAGAGAAAGCACGTAGGAACATCCATTGATTGTTATATGAAGCAA 1434 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2742 TGC-AGTTTGAACATAAGAGAAAGCACGTAGGAACATCCATTGATTGTTACATGAAGCAA 2800 Query 1435 TTTGGTGTTTCATGGGAAAACGCGGAAGAAGAGATCAAAATCATGGCATTGGATTCATGG 1494 | |||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 2801 TATGGTATTTCATGGGAAAAAGCCGAAGAAGAGATCAAAATCATGGCATTGGATTCATGG 2860 Query 1495 AAGAGTCTTAATCAAGAACTTATGACGAGAGATCACTCTTTTCCTTTCCCTATCGTCATG 1554 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 2861 AAGAGTCTTAATCAAGAACTGATGACGAGAGATCACTCTTTTGCTTTCCCTATCGTCATG 2920 Query 1555 CGATTCCTAAACCTCTCGAGGGTCGTCGAAG-TTTTCTACAAAGACACAGACATTTTCAC 1613 ||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||| || Sbjct 2921 CGATTCCTAAACCTCTCGAGGGTCGTC-AAGGTTTTGTACAAAGACACTGACATTTTTAC 2979 Query 1614 GTATCCTGAGTTGATGAAACATCACGTGGTTTCTTTATTCCTTAACAAGA-TATCTATT 1671 ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2980 ACATCCTGAGTTGATGAAACATCACGTGGTTTCTTTATTCCTTAACA-GAATATCTATT 3037 Score = 451 bits (244), Expect = 9e-126 Identities = 269/281 (96%), Gaps = 1/281 (0%) Strand=Plus/Plus Query 120 GGAGAGTGAGATAAACGAAGAGAAGCTGAGTTCACTAAAGGAAACCGTAAGAGAATTGTT 179 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 192 GGAGAGTGAGATAAACGAAGAGAAGCTGAGTTCACTAAAGGAAACCGTAAGAGGATTGTT 251 Query 180 AATGGCTTCAAAAGAAGAGCCGATAGAGAACATCAAATTAATTGATGCTCTTTGTCGCCT 239 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 252 AATGGCTTCAAAAGAAGAGCCGATAGAGAACATCAAATTCATTGATGCTCTTTGTCGCCT 311 Query 240 TGGTATCTCCTACCACTTTGAAGGAGAAATCTTCGCGCAGTTAGAGACGATGTTTGGTTG 299 |||| | |||||||||||||||| ||| |||||| ||||||||||||||||||||||| | Sbjct 312 TGGTGTTTCCTACCACTTTGAAGTAGACATCTTCACGCAGTTAGAGACGATGTTTGGT-G 370 Query 300 TCATGGTTTTATGCAGATGATAAGAGACAATGAGTTCGATTTATACACCGTCTCTCTTGT 359 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || || Sbjct 371 TCATGGTTTTATGCAGATGATAAGAGGCAATGAGTTCGATTTATACACCGTCTCCCTCGT 430 Query 360 CTTCCAAGTTTTTAGACAATTTGGCTATAAACTTGGTGTCG 400 ||||||| ||||||||||||||||||||||||||||||||| Sbjct 431 CTTCCAAATTTTTAGACAATTTGGCTATAAACTTGGTGTCG 471 Score = 446 bits (241), Expect = 4e-124 Identities = 254/260 (98%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 1122 TAAAAAATC-GATGATTGTAACTGCTAAAGCCTATCTTCAAGAGGCAAAATGGTTGAGTG 1180 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1808 TAATAAATCAGATGATTGTAACTGCTAAAGCCTATCTTCAAGAGGCAAAATGGTTGAGTG 1867 Query 1181 AAGACTATGTGGCAACATTTGACGAGTACAAAGAAAACGGAGTTTATTCATCGAGCTACT 1240 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1868 AAGACTTTGTGGCAACATTTGACGAGTACAAAGAGAACGGAGTTTATTCATCGAGCTACT 1927 Query 1241 TAGCTCTGTTAACAGGATCCTTTCTAGGAATGGTGGATGAAGGCACACTTGATGTGTTTG 1300 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1928 TAGCTCTGTTAACAGGATCCTTTCTAGGGATGGTGGATGAAGGCACCCTTGATGTGTTTG 1987 Query 1301 AATGGTTAAGCACTTTCCCACCCCTTCTTGTGACTTCTGCACTAATAGGCCGTCTCTGTG 1360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1988 AATGGTTAAGCACTTTCCCACCCCTTCTTGTGACTTCTGCACTAATAGGCCGTCTCTGTG 2047 Query 1361 GTGACATTGCTAGTTGCGAG 1380 |||||||||||||||||||| Sbjct 2048 GTGACATTGCTAGTTGCGAG 2067 Score = 117 bits (63), Expect = 4e-25 Identities = 76/82 (93%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 41 AAGAAATTA-ATCGGCCATTAGCCGATTTTCCGGTGAATATATGGGAAGATCCCTTGATC 99 |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 AAGAAA-TATATCGGCCATTAGCGGATTTTCCGGTGAATATATGGGAAGATCCCTTGATC 59 Query 100 TCTTTTCCTGTTTTAGACCCGG 121 |||||| ||||||| || |||| Sbjct 60 TCTTTTTCTGTTTTGGATCCGG 81 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82730498160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5