BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348010
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49140.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 944 0.0
AT5G24060.2 | Symbols: | Pentatricopeptide repeat (PPR) superf... 370 2e-101
> AT3G49140.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:18211863-18215619 REVERSE LENGTH=1886
Length=1886
Score = 944 bits (511), Expect = 0.0
Identities = 645/708 (91%), Gaps = 15/708 (2%)
Strand=Plus/Plus
Query 343 gatgatgatgatgatgatgaATCGCTGGCAGACTGGGCAAATTTGGAAACAATGAGGAGT 402
|||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 825 GATGATTCTGATTCTGATGAATCGCTGGGAGACTGGGCAAATTTGGAAACAATGAGGAGT 884
Query 403 TGCCATCCCATGtttttttttttAAAGAGAATGACTGAGGTTGCTTCAGATGATCTTGTT 462
|| ||||||||| |||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 885 TGTCATCCCATG---TTTTTTGCAAAGAGAATGACTGAGGTTGCTTCAAATGATCCTGTT 941
Query 463 GATTGGATGGATCAGCCGTCTGCTGGCCTTGCTATCCAGGGAATTCTGAGTCATATCTTA 522
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 942 GATTGGATGGATCAGCCGTCTGCTGGCCTTGCTATCCAGGGACTTTTGAGTCATATCTTA 1001
Query 523 GTGGAAGATTATTCAGATATCCAAAGGAAACTTGCTGATAACAATTCTACAAGTACGAAC 582
||||||||||||||||||||||||| |||||||||||||| ||||||||||| || | |
Sbjct 1002 GTGGAAGATTATTCAGATATCCAAAAGAAACTTGCTGATAGCAATTCTACAACTA--A-C 1058
Query 583 AGAAACAAGGATGCAGAAAACTTAGAAGAAAAGCTTGCAGACATTAGTAAGGCATGTGGT 642
|||||||||||||||||||||||| || ||||||| ||||| |||||||||| |||||
Sbjct 1059 GGAAACAAGGATGCAGAAAACTTAGTGGACAAGCTTGAAGACAATAGTAAGGCAGGTGGT 1118
Query 643 GAAGAATCTGACATAGATTCATCGCAGGGTGAAAAAGAAAGAACTGTGGTGGCATTTTAC 702
|| |||||||| ||||||||||| |||| |||||||| ||||| ||||||||| ||||||
Sbjct 1119 GACGAATCTGAGATAGATTCATCACAGGATGAAAAAGCAAGAAATGTGGTGGCGTTTTAC 1178
Query 703 AAGCTGGAGATGATAAGAATTCAGCTTATTACACCACAAGC---T--G---GA-GTTGAG 753
||||||||||||||||||||||||||||| ||| |||||| | | || ||||||
Sbjct 1179 AAGCTGGAGATGATAAGAATTCAGCTTATCACAGCACAAGGGGATCAGACTGAAGTTGAG 1238
Query 754 GTGGAAGATGTCAGAAAAGCACAACCTGATGTTATTGCTCATGCATCAGCTGGAATCATA 813
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1239 GTGGAAGATGTCAGAAAAGCACAACCTGATGCTATTGCTCATGCATCAGCTGAAATCATA 1298
Query 814 AGCCGTTTAGAAGAATCTGGTGATAAAGTAACTGAAGCCCTCAAATCTCTGTGTTGGAGA 873
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1299 AGCCGTTTAGAAGAATCTGGTGATAAAATAACTGAAGCACTCAAATCTCTGTGTTGGAGA 1358
Query 874 CATAATGGTATTCAAGCAGAGGAAGTGAAGCTGATTGGGGTAGATTCCCTAGGTTTTGAC 933
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1359 CATAACAGTATTCAAGCAGAGGAAGTGAAGCTGATTGGGATAGATTCCCTAGGTTTTGAC 1418
Query 934 CTCAGGCTTTGCGCAGGAGCAAAAATTGAGTCATTTCGGTTTGCATTCTTGACAAGGGCA 993
||||||||||||||||||||||| ||||||||||| || |||||||||| ||||||||||
Sbjct 1419 CTCAGGCTTTGCGCAGGAGCAAAGATTGAGTCATTGCGATTTGCATTCTCGACAAGGGCA 1478
Query 994 ACATCAGAAGACAATGCAGAGGGACGAATAAGAGAGCTATTATTCCCG 1041
||||||||||| || |||||||||| ||||||| | ||||||||||||
Sbjct 1479 ACATCAGAAGAAAACGCAGAGGGACAAATAAGAAAACTATTATTCCCG 1526
Score = 289 bits (156), Expect = 4e-77
Identities = 174/183 (95%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 180 GCAAGTTATAGTAGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGGGTCT 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 614 GCAAGTTATAGTTGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGGGACT 673
Query 240 TTCTGATAGTGACTTTGAAACTGAAGATGATGAAAGTGGAGAAGATGACAGTGAGGATAC 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 674 TTCTGATAGTGACTTTGAAACTGAAGATGATGAAAGTGGAGATGATGACAGTGAGGATAC 733
Query 300 AGGAGAAGACGAATATGAGGAGGAATGGGTTGCTGTTCTAGAGgatgatgatgatgatga 359
||||||||||||| |||||||||||||||||||| || |||||||||| ||||| || ||
Sbjct 734 AGGAGAAGACGAAGATGAGGAGGAATGGGTTGCTATTTTAGAGGATGAAGATGAAGACGA 793
Query 360 tga 362
|||
Sbjct 794 TGA 796
> AT5G24060.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:8129979-8133301 REVERSE LENGTH=1811
Length=1811
Score = 370 bits (200), Expect = 2e-101
Identities = 710/935 (76%), Gaps = 119/935 (13%)
Strand=Plus/Plus
Query 180 GCAAGTTATAGTAGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGG-GTC 238
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 569 GCAAGTAATAGTAGGTTTTGATACGATGGAGATGATCAAGGACATGGAGCTGA-GCAGTC 627
Query 239 TTTCTGATAGTGACTTTG--A---AAC---T-GAAGATGATGAAAGTGGAGA--AG-ATG 286
|||| || || |||| | || | ||||||| |||||||| || || |||
Sbjct 628 CATCTGGTATTGGTTTTGGGATTGAAGAAATCGAAGATGGTGAAAGTGAAGTTGAGGATG 687
Query 287 A---CA-G-----TGAGGAT-ACAGGAGAAGACGAATATGAGGAGGAATGGGTTGCTGTT 336
| || | ||||||| | |||||||||| || |||| ||||||||||||||||||
Sbjct 688 AAAACAAGGGCGATGAGGATGA-AGGAGAAGACAAAGATGACGAGGAATGGGTTGCTGTT 746
Query 337 CTAGAGgatg-a--tgatga---t------g----a---t--gatgaATCGCT-GGCAGA 374
||||| |||| | ||| || | | | | |||||||| || || |||
Sbjct 747 CTAGAAGATGGAGATGACGAGGATAACTATGTCTCAGACTCTGATGAATCACTTGG-AGA 805
Query 375 CTGGGCAAATTTGGAAACAATGAGG-AGTTGCCATCCCATGtttttttttttAAAGAGAA 433
||||||||| |||||||| ||| | | ||||||||| |||| |||| | ||| |
Sbjct 806 CTGGGCAAACTTGGAAACGATGCGATA-TTGCCATCCTATGTATTTTGCC--AG-GAGGA 861
Query 434 TGACTGAGGTTGCTTCAGA-TGATCTTGTTGATTGGATGGATCAGCCGTCTGCTGGCCTT 492
|| | |||||||||||| | ||||| ||| ||||||||||||||||||| |||||||||
Sbjct 862 TGGCCGAGGTTGCTTCA-ACTGATCCTGTAAATTGGATGGATCAGCCGTCCGCTGGCCTT 920
Query 493 GCTATCCA-GGGAATTCT-GAGTCATATC-TTAGTGGAAGATTATTCAGATATCCAAAGG 549
|||||||| ||| | || ||||| | || || ||||||||| | |||||||||||||
Sbjct 921 GCTATCCAAGGGC-T-CTTGAGTCCTGTCATT-GTGGAAGATCACTCAGATATCCAAAA- 976
Query 550 A-A-A-CT-TGCT-GATAACAATTCTACAAGTAC-GAACAGAAACAAGGAT-GCAGAAAA 602
| | | || || | | || | | ||||| | || || || ||||||||| | ||||||
Sbjct 977 ACATATCTCTGGTTG-TAT-A-T-CTACAGGCACTGA-CAAAAACAAGGAGAG-AGAAAA 1030
Query 603 CTTAGAAGAAAAGCTTGCAGACATTAGTAAGGCATGTGGTGA-A--GAATCTGACATAGA 659
|| |||||| | | | || | ||||||| |||||| | |||||||| |||
Sbjct 1031 CTCAGAAGAGA---T---AT---TT-G-AAGGCAT-TGGTGAGAATGAATCTGAGATA-- 1076
Query 660 TTCATCGCAGGGTGAAAAAGAAAGAACTG-TGGTGGCATTT-TACAAGCTGGAGATGATA 717
|| ||| | |||||| |||| || | | || | |||||||||||||| |||
Sbjct 1077 TT----GCATGTTGAAAATTCGAGAAATGCTA-TA-CAGTACTACAAGCTGGAGATAATA 1130
Query 718 AGAATTCAGCTTATTACA-C-CA----CA--AG-CTGGAGTTGAGGTGGAAGATGTCAGA 768
||||| ||||| || || | || || || ||| ||| || |||||||| |||||
Sbjct 1131 AGAATCCAGCTCATCACGGCACAGGGGCATCAGACTGAAGTGGAAGTGGAAGACGTCAGG 1190
Query 769 AAAGCACAACCTGATGTTATTGCTCATGCATCAGCTGGAAT-CATAAGC-CGTTTAGAAG 826
|||||||||||||||||||||||| |||||||| ||| || | | | | ||| ||||||
Sbjct 1191 AAAGCACAACCTGATGTTATTGCTTGTGCATCAGATGGTATAC-TGA-CTCGTCTAGAAG 1248
Query 827 AATCTGGTGATAAAGTAACTGAAGCCCTCAAATCTCTGTGTTGGAGACATAATGGTATTC 886
|| ||| |||||| |||||||||| |||| |||||||||||||||| ||||||| ||||
Sbjct 1249 AAGATGGCGATAAACTAACTGAAGCTCTCAGATCTCTGTGTTGGAGAAATAATGGGATTC 1308
Query 887 AAGCAGAGGAAGTGAAGCTGATTGGGGTAGATTCCCTAGGTTTTGACCTCAGGCTTTGCG 946
||||||||||||||||||| |||||| ||||||| || ||||| ||||| ||| |||||
Sbjct 1309 AAGCAGAGGAAGTGAAGCTCATTGGGATAGATTCACTTGGTTTCGACCTTAGGATTTGCT 1368
Query 947 CAGGA--GCAAAAATTGAGTCATTTCGGTTTGCATTCTTGACAAGGGCAACATCAGAAGA 1004
||||| ||||| ||||| |||| ||||||||||||| || |||||||||||||||| |
Sbjct 1369 CAGGAATGCAAA--TTGAGACATTACGGTTTGCATTCTCGATAAGGGCAACATCAGAACA 1426
Query 1005 CAATGCAGAGGGACGAATA-AGAGAGCTATTATTC 1038
||| || ||||||| | | ||||| ||||||||
Sbjct 1427 CAACGCTGAGGGAC-AGTTGAGAGAATTATTATTC 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5