BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348023
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49270.3 | Symbols: | FUNCTIONS IN: molecular_function unkn... 300 2e-80
AT3G49305.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 145 8e-34
> AT3G49270.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED
DURING: 4 anthesis, C globular stage, petal differentiation
and expansion stage; BEST Arabidopsis thaliana protein
match is: proline-rich family protein (TAIR:AT3G49300.1); Has
61 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria
- 0; Metazoa - 27; Fungi - 0; Plants - 30; Viruses -
0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:18267398-18268270
REVERSE LENGTH=501
Length=501
Score = 300 bits (162), Expect = 2e-80
Identities = 216/240 (90%), Gaps = 11/240 (5%)
Strand=Plus/Plus
Query 1 ATGCTTTCAAAGATGAAGCTGGTGGTTCTCATGTCGTTCTTGCTCCTTCTCCCCTTGTGT 60
||| ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 41 ATGTTTTCAAAGATGCAGCTGGTGGTTCTCATGTCGTTCTTGCTCCTTCTTCCATTGTGT 100
Query 61 TCTTCAAGCTTTGGAGAGAGCCATGGAGATGGAGCTCCTCACACCGACCAATATTCAGTA 120
|||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| ||
Sbjct 101 TCTTCAAGGTTTGGAGAGAGCCATGAAGATGGAGTTCCTCACACCGACCAATATTCACTA 160
Query 121 AATATGGTTGAAGAGAGTATTCCGAAAATGATGGATAGTCCGGAAACAGGCCCAAACCCA 180
||||||||||||||||||||||||||||||||||| | | ||||| ||||||||
Sbjct 161 AATATGGTTGAAGAGAGTATTCCGAAAATGATGGA-A------A--CAGGCACAAACCCA 211
Query 181 AGCCACGATCAGAGAGTAAACGGTTGGGGTCGTCCTACACGGCCACCGCCA-C-CGGATG 238
||||||||||||| | ||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 212 AGCCACGATCAGACAACAAACGGTTGGGGTCGTCCTACGCGGCCACCGCCATCGCGGATG 271
> AT3G49305.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G49300.1); Has 18
Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:18279750-18280408
REVERSE LENGTH=260
Length=260
Score = 145 bits (78), Expect = 8e-34
Identities = 188/238 (79%), Gaps = 19/238 (8%)
Strand=Plus/Plus
Query 1 ATGCTTTCAAAGATGAAGCTGGTGGTTCTCATGTCGTTCTTGCTCCTTCTCCCCTTGTGT 60
|||||||||||||||||||||||||||||||||||||||||||| || || || ||||||
Sbjct 24 ATGCTTTCAAAGATGAAGCTGGTGGTTCTCATGTCGTTCTTGCTTCTGCTTCCATTGTGT 83
Query 61 TCTTCAAGCTTTGGAGAGAGCCATGGAGATGGAGCTCCTCACACCGACCAATATTCAGTA 120
|| || | ||||||||| ||||||||| | | ||| ||||| |||||||||| ||
Sbjct 84 TCATCGGGATTTGGAGAGGGCCATGGAGTT--A-CTC---ACACCAACCAATATTCCTTA 137
Query 121 AATA-TGGTTGAAGAGAGTATTCCGAAAATGATGGAT-AGTCCGGAAACAGGCCCAAACC 178
|| | | |||| |||||||| || | || |||||| | ||| ||| ||||||| ||||
Sbjct 138 AACAATC-TTGAGGAGAGTATCCCCACGATCATGGATTA-TCCAGAACCAGGCCCTAACC 195
Query 179 CAAGCCACGATC-AGAGAGTAAAC--GGTTGGGGTCGTCCTACACGGCCACCGCCACC 233
||| || |||| | | | |||| |||| ||||||||| | || ||||| |||||
Sbjct 196 CAATACATGATCCA-AC-G-AAACCCGGTTATGGTCGTCCT-C-CG-CCACCTCCACC 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5