BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348042
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein ki... 878 0.0
> AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:26216126-26218153 REVERSE LENGTH=2028
Length=2028
Score = 878 bits (475), Expect = 0.0
Identities = 572/619 (92%), Gaps = 5/619 (1%)
Strand=Plus/Plus
Query 344 CAATGGCAGCGAAAGAAAGAG-TTTTAAATGAAGTTAAGATCATCAGCAAACTGAGACAT 402
||| ||||| ||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1154 CAA-GGCAGGGAAAGAACGAGTTTTTAAACGAAGTTAAGATCATCAGCAAACTGAGACAT 1212
Query 403 CGAAACATGGTGCAACTCATTGGTTGGTGTAATGaaaaaaaCGAGTTCTTGCTGATATAT 462
|||||| | ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1213 CGAAACCTCGTGCAGCTCATCGGTTGGTGTAATGAGAAAAATGAGTTCTTGCTGATATAT 1272
Query 463 GAGTTAGTGCAAAATGGTAGCTTGAACTCCCAACTCTTTGGCAAAAGACCCCATTTACTT 522
|||||||| | |||||||||||||||||| || |||||||| ||||||||| ||||||||
Sbjct 1273 GAGTTAGTTCCAAATGGTAGCTTGAACTCTCACCTCTTTGGGAAAAGACCCAATTTACTT 1332
Query 523 TCTTGGGACATAAGGTACAAGATAGCTCTTGGTTTAGCCTCTGCTCTGCTTTATCTTCAT 582
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1333 TCTTGGGACATAAGGTACAAGATAGGTCTTGGTTTAGCCTCTGCTCTGCTTTATCTTCAT 1392
Query 583 GAAGAATGGGATCAATGTGTACTGCACAGAGACATCAAAGCAAGCAATATAATGCTTGAC 642
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1393 GAAGAATGGGATCAATGTGTACTGCACAGAGACATCAAGGCAAGTAATATAATGCTTGAC 1452
Query 643 AGTGATTTCAATGTAAAGTTAGGTGATTTCGGTTTGGCTCGGGTTATGAACCATGAACAT 702
||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||| |
Sbjct 1453 AGTGAATTCAATGTAAAGTTAGGTGATTTCGGGTTGGCTCGGCTAATGAACCATGAACTT 1512
Query 703 GGTTCCCATACAACAGGATTGGCTGGAACTTTTGGGTACATGGCACATGAATATGTAACG 762
|||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1513 GGTTCCCATACAACGGGGTTGGCTGGAACTTTTGGGTACATGGCACCTGAATATGTAATG 1572
Query 763 AAAGGAAGTGCGAGTAAAGAGTCTGATATATATAGCTTTGGAATTGTTTTACTAGATATT 822
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1573 AAAGGAAGTGCGAGTAAAGAATCTGATATATATAGCTTTGGAATTGTTTTACTAGAGATT 1632
Query 823 GTCACAGGGAGAAAATCACTGGAACGAACGCAAGAAGATAACAGTGATTCAGAGAGT-A- 880
||||||||||||||||| |||||||| || |||||||||||||||||| |||||||| |
Sbjct 1633 GTCACAGGGAGAAAATCGCTGGAACGTACACAAGAAGATAACAGTGATACAGAGAGTGAT 1692
Query 881 -ATGAGAAGAGTCTTGTGGAGAAAGTTTGGAAACTTTATGGAAAACAAGAAGAGATGACT 939
||||||||||||| ||||||||||||||| | |||||||||||||||||| ||| |||
Sbjct 1693 GATGAGAAGAGTCTAGTGGAGAAAGTTTGGGAGCTTTATGGAAAACAAGAACTGATCACT 1752
Query 940 TCGTCTGTTGATGAGAAAT 958
|| | ||||||||| ||||
Sbjct 1753 TCATGTGTTGATGACAAAT 1771
Score = 364 bits (197), Expect = 7e-100
Identities = 249/274 (91%), Gaps = 4/274 (1%)
Strand=Plus/Plus
Query 1 ATGTTTGGGTTTATAGCTGCTGCTGGAACAAACACAGAGGAACATAGACTTTTATCATGG 60
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 742 ATGTTCGGGTTTATAGCTGCCGCTGGGACAAACACAGAGGAACATAGACTTTTATCATGG 801
Query 61 GAGCTCAGTTCAACTTTGGATATCGAGAAAGCCGATAGCAAGATAGGATTGGTAGTTGGC 120
||||||||||||| |||||| | ||| ||||||||||||| ||||||| | ||| |||||
Sbjct 802 GAGCTCAGTTCAAGTTTGGACAGCGACAAAGCCGATAGCAGGATAGGACTAGTAATTGGC 861
Query 121 ATTTCGGTTTCCGGGTTTGTTTTACTGATAGTTT-TGGTCCA-CACGATCGTGGTGGTTT 178
||||||| ||||||||||||||| |||| |||| ||||| | ||| | |||||||||||
Sbjct 862 ATTTCGGCTTCCGGGTTTGTTTTTCTGAC-GTTTATGGTC-ATCACAACCGTGGTGGTTT 919
Query 179 GGTCACGGAAGCAAAGAAAAAAGAAAGACAGAGATATAGCAAACATGATATCGATAAACG 238
||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 920 GGTCACGGAAGCAAAGAAAGAAGAAAGAAAGAGATATAGAAAACATGATATCGATAAACA 979
Query 239 AAGATCTTGAAAGGGAAGCAGGACCAAGAAAGTT 272
|||| |||||||||||||||||||||||||||||
Sbjct 980 AAGACCTTGAAAGGGAAGCAGGACCAAGAAAGTT 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5