BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348075
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting fac... 555 4e-157
> AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22988547-22990709 REVERSE LENGTH=1805
Length=1805
Score = 555 bits (300), Expect = 4e-157
Identities = 387/426 (91%), Gaps = 18/426 (4%)
Strand=Plus/Plus
Query 1 ATGGATTTGTATGAGGCCGAGTATAACGAGGACTTCATGAAGAGTATCATCCAtggtggt 60
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 302 ATGGATTTGTATGAGGCAGAGTATAACGAGGATTTCATGAAGAGTATCATCCA---TGGT 358
Query 61 ggtggtggtgCCAACA-AGAATCTCGGAGACACGCAGGTTGTTCCACAAAGTCATGTTGT 119
||||||||||||| || | |||||||| |||||||||||||||||||||||||||||||
Sbjct 359 GGTGGTGGTGCCATCACA-AATCTCGGGGACACGCAGGTTGTTCCACAAAGTCATGTTGC 417
Query 120 TCCT-CCTCATGAAACAGACATGTTGGAAAGCAATAGACATGTTGACGGTTCAACTTTGA 178
| || || ||||||||| |||||||||||||||||| |||||||||| | | ||
Sbjct 418 TGCTGCC-CATGAAACAAACATGTTGGAAAGCAATAAACATGTTGAC-G----A--TT-- 467
Query 179 TTGAGACTTTGAAAGCTTCTTCATCAAAGAGGATGATGATTGATTATGATAACCGAATGA 238
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 468 CTGAGACTTTGAAAGCTTCTTCATCAAAGAGGATGATGGTTGATTATCATAACCGAAAGA 527
Query 239 AGATCAAGTTTATACCTCCTGATGAGCAATCTGTGGTTGCTGAAAGGAT-GGTCGAATCG 297
||||||||||||||||||||||||||||||| ||||||||||| ||| | | || ||| |
Sbjct 528 AGATCAAGTTTATACCTCCTGATGAGCAATCCGTGGTTGCTGATAGG-TCGTTCAAATTG 586
Query 298 GGCTTTAACACTTCCTCCGCAGGTTTTACTGAAGACAGTGAAGGATCGATGTATCTAAGC 357
|||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 587 GGCTTTGACACTTCCTCCGTAGGTTTCACTGAAGACAGTGAAGGATCGATGTATCTAAGC 646
Query 358 AGCAGTCTAGATGACGAGTCAGATGATGCGAGGCCACAAGTTCCTGCAAGAACAAGAAAA 417
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AGTAGTCTAGATGACGAGTCAGATGATGCGAGGCCACAAGTTCCTGCAAGAACAAGAAAA 706
Query 418 GCTTTG 423
||||||
Sbjct 707 GCTTTG 712
Score = 518 bits (280), Expect = 5e-146
Identities = 314/330 (95%), Gaps = 4/330 (1%)
Strand=Plus/Plus
Query 608 TGGGAATGCAAATGGGCGCACAACAGTTTCTGCCTGCACATGTCCTAGGAGCTGGCTTGC 667
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 978 TGGGAATGCAAATGGGCGAACAACAGTTTCTGCCTGCACATGTTCTAGGAGCTGGCTTGC 1037
Query 668 CTGGGATTAATGATTCAGCAGATATGCTAAGGTTTCTTAACCATCCTGGACTAATACAAA 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1038 CTGGGATTAATGATTCAGCAGATATGCTAAGGTTTCTTAACCATCCTGGACTAATGCCAA 1097
Query 728 TGCAAAAATCTGCACCTTTCACTCCAACGGAAGATTGTTCCCCACAATCTGTCCCTCCAT 787
||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1098 TGCAAAACTCTGCACCTTTCATTCCAACGGAAAATTGTTCCCCACAATCTGTCCCTCCAT 1157
Query 788 CGTGCGCTGCTTTCCCTAACCATATACCAAACTCC-ACCTCTTTGTCAAATTTAGATGGT 846
|||||||||||||||||||||| |||||||| ||| | ||||||||||||||||||||||
Sbjct 1158 CGTGCGCTGCTTTCCCTAACCAAATACCAAA-TCCCAACTCTTTGTCAAATTTAGATGGT 1216
Query 847 GCATCACCTTACACAAGAAATCAAGGAACATTAACAGATGAAGGAATTCTCCCTGGTAAA 906
||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1217 GCA--ACCTTACACAAGAAATCAAGGAAAACTAACAGATGAAGGAATTCTCCCTGGTAAA 1274
Query 907 AATCTGGAAACCCGTGAGCAGATGAAATAA 936
|||||||||||||||||||||||||| |||
Sbjct 1275 AATCTGGAAACCCGTGAGCAGATGAAGTAA 1304
Score = 261 bits (141), Expect = 9e-69
Identities = 172/186 (92%), Gaps = 5/186 (3%)
Strand=Plus/Plus
Query 423 GAAA-CAAAGAAGA-GACATCAACAAGAAAATGCGTACTTTGCAGGATCTACTACCTAAT 480
|||| ||||||| | || |||||||||||||||||||||||||| |||||||||||||
Sbjct 756 GAAATCAAAGAA-ATGATATCAACAAGAAAATGCGTACTTTGCAAAATCTACTACCTAAC 814
Query 481 TCTCACAAGGATGACAACGAATCAG-TGTTGGATGAAGCAATCAATTATATGAAAAACCT 539
||||||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||
Sbjct 815 TCTCACAAGGACGACAACGAATC-GATGTTGGATGAAGCAATCAATTATATGACAAACCT 873
Query 540 TCAACTTCAAGTTCAGATGATGACGATGGGTAACACATTTGTTACAACATCAATGATGTT 599
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 874 TCAACTTCAAGTTCAGATGATGACGATGGGTAACAGATTTGTTACACCATCAATGATGAT 933
Query 600 GCCTTT 605
||||||
Sbjct 934 GCCTTT 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5