BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348080
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49700.1 | Symbols: ETO3, ACS9, AtACS9 | 1-aminocyclopropane... 2289 0.0
AT5G65800.1 | Symbols: ACS5, CIN5, ETO2, ATACS5 | ACC synthase ... 1330 0.0
> AT3G49700.1 | Symbols: ETO3, ACS9, AtACS9 | 1-aminocyclopropane-1-carboxylate
synthase 9 | chr3:18434470-18436141 REVERSE
LENGTH=1413
Length=1413
Score = 2289 bits (1239), Expect = 0.0
Identities = 1356/1414 (96%), Gaps = 2/1414 (0%)
Strand=Plus/Plus
Query 1 ATGAAACAACTGTCGACAAAAGTGACAAGCAATGCTCATGGACAAGACTCTTCCTACTTC 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAACAACTGTCGAGAAAAGTGACAAGCAATGCTCATGGACAAGACTCTTCCTACTTC 60
Query 61 TTGGGATGGGAAGAATACGAGAAGAACCCTTACAACGAAATCAAGAACCCTAATGGGATT 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TTGGGATGGGAAGAATACGAGAAGAACCCTTACGACGAAATCAAGAACCCTAATGGGATT 120
Query 121 ATTCAAATGGGTCTTGCCGAAAATCAGCTATGTTTTGATCTCATAGAGACATGGTTAGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTCAAATGGGTCTTGCCGAAAATCAGCTATGTTTTGATCTCATAGAGACATGGTTAGCT 180
Query 181 AAGAATCCGGACGCAGCCGGACTCAAGAAGGACGGCCAATCCATTTTCAAAGAGCTTGCT 240
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 AAGAATCCGGACGCAGCCGGACTAAAAAAGGACGGCCAATCCATTTTCAAAGAGCTTGCT 240
Query 241 CTCTTCCAAGACTATCATGGCCTACCTGAATTCAAGAAAGCTTTGGCTGAGTTTATGGAG 300
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 241 CTCTTTCAAGACTATCATGGCCTACCCGAATTCAAGAAAGCTTTGGCAGAGTTTATGGAG 300
Query 301 GAAATAAGAGGAAATAGAGTAACATTTGATCCTAGCAAGATTGTCCTAGCTGCTGGTTCA 360
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GAAATCAGAGGAAATAGAGTAACATTTGATCCAAGCAAGATTGTCCTAGCTGCTGGTTCA 360
Query 361 ACCTCTGCCAACGAAACTCTCATGTTTTGTCTCGCCGAACCCGGGGACGCTTTCCTTTTA 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACATCTGCCAACGAAACTCTCATGTTTTGTCTCGCCGAACCCGGGGACGCTTTCCTTTTA 420
Query 421 CCAACTCCTTACTACCCAGGATTTGATAGAGATTTGAAATGGAGAACGGGAGCAGAGATC 480
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 421 CCAACTCCTTACTATCCAGGATTCGATAGAGACTTGAAATGGAGAACGGGAGCAGAGATC 480
Query 481 GTACCTATCCATTGCTCAAGCTCTAATGGGTTCCAAATAACAGAGTCAGCTCTTCAACAA 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTACCTATTCATTGCTCAAGCTCTAATGGGTTCCAAATAACAGAGTCAGCTCTTCAACAA 540
Query 541 GCTTATCAGCAAGCTCAAAAGCTTGATCTTAAGGTCAAAGGAGTTCTTGTTACCAACCCG 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTTATCAACAAGCTCAAAAGCTTGATCTTAAGGTCAAAGGAGTTCTTGTTACCAACCCG 600
Query 601 TCTAACCCTCTTGGCACAATGTTGACCCGAAGGGAAATTAACCTCCTAGTTGACTTCATT 660
||||||||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||
Sbjct 601 TCTAACCCTCTTGGCACAATGTTGACCAGAAGAGAACTTAACCTTCTCGTTGACTTCATT 660
Query 661 TCTTCCAAAAACATTCATCTCATAAGCGACGAGATATATTCAGGTACTGTTTTTGGGTTT 720
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 661 ACTTCCAAAAACATTCATCTCATAAGCGACGAGATCTATTCAGGTACCGTTTTTGGGTTT 720
Query 721 GAACAGTTTGTTAGTGTCATGGATGTCTTAAAAGACAAGAATCTTGAGAACAGCGAAGTC 780
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 721 GAACAGTTTGTAAGTGTCATGGATGTCTTAAAAGACAAGAACCTCGAGAACAGCGAAGTC 780
Query 781 TCCAAACGAGTTCATGTCGTTTATAGTCTTTCCAAAGATCTCGGTTTACCGGGTTTTCGC 840
||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 TCCAAACGAGTTCATATTGTTTATAGTCTTTCCAAAGATCTCGGTTTACCAGGTTTTCGC 840
Query 841 GTTGGAGCAATATACTCCAACGACGAAATGGTTGTTTCCGCTGCCACAAAAATGTCAAGT 900
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 GTAGGAGCAATTTACTCCAACGACGAAATGGTTGTTTCCGCTGCAACAAAAATGTCAAGT 900
Query 901 TTCGGCCTCGTGTCTTCTCAAACACAGTACCTTCTCTCTGCATTACTTTCCGACAAAAAG 960
||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 901 TTCGGTCTCGTGTCTTCTCAAACACAGTACCTTCTCTCTGCATTGCTTTCAGACAAGAAG 960
Query 961 TTCACAAGTACATACCTCAACGAAAACCAGAAAAGACTCAAGATTCGTCAGAAGCAACTC 1020
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 961 TTCACAAGTACATACCTCGACGAAAACCAGAAAAGACTCAAGATTCGTCAGAAGAAACTC 1020
Query 1021 GTGTCCGGTCTAGAAGCTGCAGGGGTTACTTGTCTTAAAAGCAACGCTGGTTTATTCTGT 1080
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1021 GTGTCCGGTCTAGAAGCTGCAGGGATTACTTGTCTTAAAAGCAACGCTGGTTTGTTCTGT 1080
Query 1081 TGGGTTGACATGAGACATCTCTTGGACACAAACACATTCGAAGCAGAGCTTCAGCTATGG 1140
|||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||
Sbjct 1081 TGGGTTGACATGAGACATCTTTTGGACACAAACACATTCGAAGCAGAACTTGAGCTATGG 1140
Query 1141 AAGAAGATTGTATATGAAGTCAAGCTAAATATTTCACCCGGTTCATCGTGCCATTGTACT 1200
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1141 AAGAAGATTGTATATGACGTCAAGCTGAATATTTCACCTGGTTCATCGTGCCATTGTACT 1200
Query 1201 GAACCAGGTTGGTTTAGGGTTTGTTTCGCCAACATGAGCGAAGATACGCTTCATTTGGCG 1260
||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1201 GAACCGGGTTGGTTTAGGGTTTGTTTCGCCAACATGAGTGAAGATACGCTTGATTTGGCG 1260
Query 1261 ATGAAGAGGTTCAAACAGTACGTAGAGTCTACAGATAGTAAAAG-GATGATTTCAAAAAG 1319
||||||||| ||||| ||||||||||||| |||||||||| ||| | |||||||||||||
Sbjct 1261 ATGAAGAGGCTCAAAGAGTACGTAGAGTCAACAGATAGTAGAAGAG-TGATTTCAAAAAG 1319
Query 1320 CAGTCATGAAAGGATCAAGAGTTTGAGGAAGAGAACTGTCTCTAACTGGGTTTTCCGGGT 1379
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1320 CAGTCATGATAGGATCAAGAGTTTGAGGAAGAGAACTGTCTCCAACTGGGTTTTCCGGGT 1379
Query 1380 TTCATGGACCGACCGCGTACCTGATGAACGATGA 1413
||||||||||||||| ||||||||||||||||||
Sbjct 1380 TTCATGGACCGACCGTGTACCTGATGAACGATGA 1413
> AT5G65800.1 | Symbols: ACS5, CIN5, ETO2, ATACS5 | ACC synthase
5 | chr5:26330746-26332812 REVERSE LENGTH=1877
Length=1877
Score = 1330 bits (720), Expect = 0.0
Identities = 1198/1429 (84%), Gaps = 32/1429 (2%)
Strand=Plus/Plus
Query 1 ATGAAACAACTGTCGACAAAAGTGACAAGCAATGCTCATGGACAAGACTCTTCCTACTTC 60
|||||||| || |||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 115 ATGAAACAGCTTTCGACAAAAGTGACAAGCAATGGTCATGGACAAGACTCATCCTACTTC 174
Query 61 TTGGGATGGGAAGAATACGAGAAGAACCCTTACAACGAAATCAAGAACCCTAATGGGATT 120
|||||||||||||| ||||||||||| ||||| | || ||||||||||||||||||||
Sbjct 175 TTGGGATGGGAAGAGTACGAGAAGAATCCTTATGATGAGATCAAGAACCCTAATGGGATG 234
Query 121 ATTCAAATGGGTCTTGCCGAAAATCAGCTATGTTTTGATCTCATAGAGACATGGTTAGCT 180
|| || |||||||| |||||||| ||||||||||| ||||| || ||| |||||||| ||
Sbjct 235 ATCCAGATGGGTCTAGCCGAAAACCAGCTATGTTTCGATCTAATCGAGTCATGGTTAACT 294
Query 181 AAGAATCCGGACGCAGCCGGACTCAAGAAGG-ACGGCCAATCCATTTTCAAAGAGCTTGC 239
||||| || ||||| || | |||||| ||| |||| ||||||||||||| |||||||||
Sbjct 295 AAGAACCCAGACGCGGCAAGTCTCAAG-AGGAACGGTCAATCCATTTTCAGAGAGCTTGC 353
Query 240 TCTCTTCCAAGACTATCATGGCCTACCTGAATTCAAGAAAGCTTTGGCTGAGTTTATGGA 299
||| || ||||||||||||||| | ||||||||||| |||||| ||||||||||||||||
Sbjct 354 TCTATTTCAAGACTATCATGGCATGCCTGAATTCAAAAAAGCTATGGCTGAGTTTATGGA 413
Query 300 GGAAATAAGAGGAAATAGAGTAACATTTGATCCTAGCAAGATTGTCCTAGCTGCTGGTTC 359
|| ||||||||||| | || || || ||||| | |||||||| |||| ||||||||
Sbjct 414 AGAGATAAGAGGAAACCGTGTCACGTTCGATCCAAAAAAGATTGTTTTAGCGGCTGGTTC 473
Query 360 AACCTCTGCCAACGAAACTCTCATGTTTTGTCTCGCCGAACCCGGGGACGCTTTCCTTTT 419
|| ||||| || || |||||||||||||| || || || || || || |||||||||||
Sbjct 474 GACATCTGCGAATGAGACTCTCATGTTTTGCCTTGCAGAGCCTGGCGATGCTTTCCTTTT 533
Query 420 ACCAACTCCTTACTACCCAGGATTTGATAGAGAT-TTGAAATGGAGAACGGGAGCAGAGA 478
|| ||||||||||| || ||||||||||||||| || ||||||||||| ||||||||||
Sbjct 534 GCCTACTCCTTACTATCCTGGATTTGATAGAGATCTT-AAATGGAGAACCGGAGCAGAGA 592
Query 479 TCGTACCTATCCATTGCTCAAGCTCTAATGGGTTCCAAATAACAGAGTCAGCTCTTCAAC 538
| ||||| || || ||||||||||||||||| |||||||| || || |||||||| ||||
Sbjct 593 TAGTACCCATTCACTGCTCAAGCTCTAATGGCTTCCAAATCACGGAATCAGCTCTGCAAC 652
Query 539 AAGCTTATCAGCAAGCTCA-AAAGCTTGATCTTAAGGTCAAAGGAGTTCTTGTTACCAAC 597
||||||| || ||||| || ||| |||||||| || ||||||||||||||||| || ||
Sbjct 653 AAGCTTACCAACAAGCCCAGAAA-CTTGATCTCAAAGTCAAAGGAGTTCTTGTCACGAAT 711
Query 598 CCGTCTAACCCTCTTGGCACAATGTTGACCCGAAGGGAAATTAACCTCCTAGTTGACTTC 657
|| |||||||| |||||||| ||||||| || | ||| ||||||| || |||||||||
Sbjct 712 CCATCTAACCCACTTGGCACTGCGTTGACCAGACGTGAACTTAACCTTCTCGTTGACTTC 771
Query 658 ATTTCTTCCAAAAACATTCATCTCATAAGCGACGAGATATATTCAGGTACTGTTTTTGGG 717
|| ||||||| |||||||||||||| ||||||||||| |||||||| ||| | || |||
Sbjct 772 ATCACTTCCAAGAACATTCATCTCATTAGCGACGAGATCTATTCAGGCACTATGTTCGGG 831
Query 718 TTTGAACAGTTTGTTAGTGTCATGGATGTCTTAAAAGACAAGAATCTTG-AGAACAGC-G 775
||||||||||| | || || ||||||||||| ||||||||||| || | || ||| | |
Sbjct 832 TTTGAACAGTTCATAAGCGTAATGGATGTCTTGAAAGACAAGAAACTCGAAG-ACA-CGG 889
Query 776 AAGTCTCCAAACGAGTTCATGTCGTTTATAGTCTTTCCAAAGATCTCGG-TTTACCGGGT 834
| || || |||||||| || ||||||||||| ||||| |||||||| || || || |||
Sbjct 890 AGGTTTCAAAACGAGTCCACGTCGTTTATAGCCTTTCTAAAGATCTGGGACTT-CCTGGT 948
Query 835 TTTCGCGTTGGAGCAATATACTCCAACGACGAAATGGTTGTTTCCGCTGCCACAAAAATG 894
|| || || ||||| || |||||||||||||||||| | ||||| || || |||||||||
Sbjct 949 TTCCGTGTGGGAGCGATCTACTCCAACGACGAAATGATCGTTTCAGCAGCTACAAAAATG 1008
Query 895 TCAAGTTTCGGCCTCGTGTCTTCTCAAACACAGTACCTTCTCTCTGCATTACTTTCCGAC 954
|||||||| || || || |||||||| ||||| ||||||||||||||||| || ||||||
Sbjct 1009 TCAAGTTTTGGTCTTGTTTCTTCTCAGACACAATACCTTCTCTCTGCATTGCTCTCCGAC 1068
Query 955 AAAAAGTTCACAAGTAC-ATACCTC-AACGAAAACCAGAAAAGACTCAAGATTC-GTCAG 1011
|| |||||||| || | ||||||| || || ||||||||| |||||||| | | | |||
Sbjct 1069 AAGAAGTTCACTAG-CCAATACCTCGAA-GAGAACCAGAAACGACTCAAG-TCCAGACAG 1125
Query 1012 AAG-CAACTCGTGTCCGGTCTAGAAG-CTGCAGGGGTTACTTGTCTTAAAAGCAACGCTG 1069
|| | |||||||| ||||| | || |||||||| ||||||| || | ||||||||| |
Sbjct 1126 -AGACGCCTCGTGTCTGGTCTTG-AGTCTGCAGGGATTACTTGCCTGAGAAGCAACGCGG 1183
Query 1070 GTTTATTCTGTTGGGTTGACATGAGACATCTCTTGGACACAAACACATTCGAAGCAGAGC 1129
|||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1184 GTTTGTTCTGTTGGGTCGACATGAGACACCTTTTGGACACAAACACATTTGAAGCAGAGC 1243
Query 1130 TTCAGCTATGGAAGAAGATTGTATATGAA-GTCAAGCTAAATATTTCACCCGGTTCATCG 1188
|| | || ||||| |||||||| || || || || ||||| || ||||||||||| ||
Sbjct 1244 TTGACCTCTGGAAAAAGATTGTTTA-CAACGTGAAACTAAACATATCACCCGGTTCTTCA 1302
Query 1189 TGCCATTGTACTGAACCAGGTTGGTTTAGGGTTTGTTTCGCCAACATGAGCGAAGATACG 1248
|| || || || ||||| ||||||||||||||||||||||| || |||||||| || ||
Sbjct 1303 TGTCACTGCACCGAACCGGGTTGGTTTAGGGTTTGTTTCGCTAATATGAGCGAGGACACA 1362
Query 1249 CTTC-ATTTGGCGATGAAGAGGTTC-AAACAGTACGTAGAGTCTACAGA-TAGTAAAAGG 1305
| || ||||||| |||||||| || |||| | |||||| || ||||| | || | |
Sbjct 1363 C-TCGATTTGGCCTTGAAGAGGCTCAAAAC-TTTCGTAGAATCCACAGACT-GTGGACGA 1419
Query 1306 ATGATTTCAAAAAGCAGTCATGAAAGGATCAAGAGTTTGAGGAAG-AGAACTGTCTCTAA 1364
||||| |||| |||||| ||||||||| ||||||||||||||||| || || ||||||||
Sbjct 1420 ATGATATCAAGAAGCAGCCATGAAAGGCTCAAGAGTTTGAGGAAGAAG-ACAGTCTCTAA 1478
Query 1365 CTGGGTTTTCCGGGTTTCATGGACCGACCGCGTACCTGATGAACGATGA 1413
||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1479 CTGGGTTTTCCGGGTTTCATGGACCGATCGTGTACCTGATGAACGATGA 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5