BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348107
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49950.1 | Symbols: | GRAS family transcription factor | ch... 1821 0.0
> AT3G49950.1 | Symbols: | GRAS family transcription factor |
chr3:18522510-18523906 FORWARD LENGTH=1397
Length=1397
Score = 1821 bits (986), Expect = 0.0
Identities = 1127/1196 (94%), Gaps = 6/1196 (1%)
Strand=Plus/Plus
Query 1 ATGACCAAAACCCGGATTCTCAACCCGACCCGATTCCCTTCTCCCAAACCCTTACGTGGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGACCAAAACCCGGATTCTCAACCCGACCCGATTCCCTTCTCCCAAACCCTTACGTGGC 120
Query 61 GGCGGCGACGCTAACTTCATGGAACAGCTCCTCCTCCACTGCGCTACCGCCATAGACTCC 120
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 121 TGCGGCGACGCTAACTTCATGGAACAGCTCCTCCTTCACTGCGCCACCGCCATAGACTCC 180
Query 121 AACGACGCCGCATTGACTCACCAAATCCTCTGGGTGCTCAACAACATCGCCCCATCAGAC 180
|||||||| ||||| |||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 181 AACGACGCTGCATTAACTCACCAAATCCTCTGGGTCCTCAACAACATCGCTCCACCAGAC 240
Query 181 GGTGACTCCACACAACGACTTACCTCCGCCTTCCTCCGCGCGTTGCTCTCACGCGCCGTC 240
||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 241 GGTGACTCCACCCAACGTCTTACATCCGCATTCCTCCGCGCGTTGCTCTCACGCGCCGTC 300
Query 241 TCCAAAACCCCTACACTATCATCCACCATTAGTTTCCTACCTCCGGCCGACGAACTCCAC 300
|||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||
Sbjct 301 TCCAAAACCCCTACACTATCATCCACCATTAGCTTCCTACCTCAGGCCGATGAACTCCAT 360
Query 301 CGGTTCTCAGTCGTGGAGCTAGCTGCATTCGTAGACCTCACTCCGTGGCACAGGTTCGGA 360
|| ||||||||||||||| |||| || |||||||||||||||||||||||| ||||||||
Sbjct 361 CGTTTCTCAGTCGTGGAGTTAGCCGCTTTCGTAGACCTCACTCCGTGGCACCGGTTCGGA 420
Query 361 TTCATAGCAGCCAACGCCGCGATCTTAACCGCCGTGGAAGGTTACTCAACGGTTCACATC 420
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TTCATTGCAGCCAACGCCGCGATCTTAACCGCCGTTGAAGGTTACTCAACGGTTCACATC 480
Query 421 GTTGACTTAAGTTTGACTCATTGTATGCAAATTCCTACTCTCATAGACGCCATGGCAAGA 480
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 481 GTTGACTTAAGTTTGACTCATTGTATGCAAATCCCTACTCTTATAGACGCCATGGCAAGC 540
Query 481 CGACTCAACAAACCTCCTCCGCTTCTTAAACTCACCGTCGTCTCTTCCTCCGACGACTTC 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 CGACTCAACAAACCTCCTCCGCTTCTTAAACTCACCGTCGTCTCTTCCTCCGACCACTTC 600
Query 541 CCACCATTCATCAACATCTCATACGAAGAACTCGGATCCAAACTCGTAAACTTCGCCACC 600
|||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct 601 CCACCATTCATCAACATCTCCTACGAAGAACTCGGATCTAAACTAGTCAACTTCGCCACC 660
Query 601 ACACGAAACATAACAATGGAGTTCACAATCATACCTTCTACTTACTCCGATGGCTTCTCT 660
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 ACACGAAACATTACAATGGAGTTCACAATCGTACCTTCTACTTACTCCGATGGCTTCTCC 720
Query 661 TCTCTAC-TCCAACAATTACGTATTTACCCTTCTTCATTCAACGAAGCTCTCGTCGTCAA 719
|| || | | ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 721 TCCCT-CTTACAACAGTTACGGATTTATCCTTCTTCATTCAACGAAGCTCTCGTCGTTAA 779
Query 720 CTGTCATATGATGCTCCGTTATATCCCTGAAGAAACCCTAACTTCATCATCATCATCTCT 779
|||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 780 CTGTCACATGATGCTCCGTTACATCCCTGAAGAACCCCTAACTTCATCATCATCATCGCT 839
Query 780 CCGAACAGTTTTCTTGAAAAC-ACTCCGATCTTTGAATCCAAGAATCGTAACCCTAATCG 838
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCGAACAGTTTTCTTG-AAACAACTCCGATCTTTGAATCCAAGAATCGTAACCCTAATCG 898
Query 839 AAGAAGACGTAGATCTCACATCGGAGGGTTTGGTTAACCGGTTAAAATCGGCGTTTAACT 898
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 899 AAGAAGACGTAGATCTCACATCGGAGAACTTGGTTAACCGGTTAAAATCGGCGTTTAACT 958
Query 899 ACTTCTGGATCCCGTTCGATACGACGGACACGTTAATGAGCGAGCAAAGACGGTGGTACG 958
|||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 959 ACTTCTGGATTCCGTTCGATACGACGGACACGTTTATGAGTGAGCAGAGACGGTGGTACG 1018
Query 959 AGGCGGAGATAAGTTGGAAGATAGAAAACGTGGTGGCGAAGGAAGGTGCggagagggtgg 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 AGGCGGAGATAAGTTGGAAGATAGAAAACGTGGTGGCGAAGGAAGGTGCGGAGAGAGTGG 1078
Query 1019 agag-attggagccgaagagacggtggatagagaggatgagagaggctgagTTCGGCGGA 1077
|||| | |||| |||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1079 AGAGGAC-GGAGACGAAGAGACGGTGGATAGAGAGAATGAGAGAGGCTGAGTTCGGTGGA 1137
Query 1078 GTTAGGGTTAAGGAAGAGGCGGTGGCTGATGTGAAGGCGATGCTGGAGGAGCACGCCGTC 1137
||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1138 GTTAGGGTTAAAGAAGATGCGGTGGCGGATGTGAAGGCGATGCTGGAGGAGCACGCTGTC 1197
Query 1138 GGGTGGGGAATGAAGACGGAAGACGACGACGAGAGTCTTGTGCTGACGTGGAAAGG 1193
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1198 GGGTGGGGAATGAAGAAGGAAGACGACGACGAGAGTCTCGTGCTGACGTGGAAAGG 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5