BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348149
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50400.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1773 0.0
> AT3G50400.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr3:18704765-18706570 FORWARD LENGTH=1290
Length=1290
Score = 1773 bits (960), Expect = 0.0
Identities = 1072/1127 (95%), Gaps = 4/1127 (0%)
Strand=Plus/Plus
Query 1 ATGAATAAAGCTAATTACTTTGTCCCA-TTCTTCGTATTCTTGTTCATTGGATCAAGATT 59
||||| ||| ||| || |||||||||| || || ||||| || ||| |||||||||||||
Sbjct 33 ATGAAGAAATCTATTTTCTTTGTCCCAGTT-TTGGTATTATTCTTCTTTGGATCAAGATT 91
Query 60 TTCTATAGTAGCTAGCGCAGGAGACCAAA-ACGCCTTAGCCGCTTCATTCGTCTTTGGCG 118
||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 92 TTCTAGAGTAGCTAGCGCAGGAGACCAAAGA-GCCTTAGCCGCTTCATTCGTCTTCGGCG 150
Query 119 ATTCGCTAGTGGACGCAGGAAATAACAACTACTTACAAACATTGTCTAGAGCCAATAGTC 178
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 151 ATTCGCTAGTAGACGCAGGAAATAACAACTACTTACAAACGTTGTCTAGAGCCAACAGTC 210
Query 179 CTCCTAATGGCATCGATTTCAAACCATCTCGTGGAAATCCAACCGGCCGGTTTACGAATG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 211 CTCCTAATGGCATCGATTTCAAACCATCTCGTGGAAATCCAACCGGCCGGTTTACTAATG 270
Query 239 GCCGTACCATAGCTGACATCGTTGGAGAAAAGTTAGGGCAGCCAAGTTATGCAGTTCCAT 298
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 271 GCCGTACCATAGCTGACATCGTTGGAGAAAAGTTAGGGCAGCAAAGTTATGCAGTTCCAT 330
Query 299 ATTTAGCACCAAATGCAAGTGGTGAAGCACTATTAAATGGCGTGAACTACGCATCAGGTG 358
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 331 ATTTAGCACCAAATGCAAGTGGTGAAGCACTATTAAATGGTGTGAACTATGCATCAGGTG 390
Query 359 GTGGTGGAATTCTCAATGCTACAGGAAGTGTATTTGTGAATCGGTTAGGAATGGACATAC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 GTGGTGGAATTCTCAATGCTACAGGAAGTGTATTTGTGAATCGGTTAGGAATGGACATAC 450
Query 419 AAGTTGATTACTTTACTATTACAAGGAAGCAATTTGATAAGCTTTTGGGTGAAGATAAGG 478
|||||||||||||||| | |||||||||||| |||||||||||||||||| ||||||| |
Sbjct 451 AAGTTGATTACTTTACCAATACAAGGAAGCAGTTTGATAAGCTTTTGGGTCAAGATAAAG 510
Query 479 CTAGAGATTACATTAGAAAGAAATCCTTATTCTCTATAGTCATTGGTTCAAACGATTTTC 538
||||||||||||||||||||| ||||||||| ||| |||| || ||||||||||||||||
Sbjct 511 CTAGAGATTACATTAGAAAGAGATCCTTATTTTCTGTAGTTATCGGTTCAAACGATTTTC 570
Query 539 TCAACAACTATCTAGTCCCTTTTGTCGCGGCTCAAGCAAGGCTAACACAAACTCCTGAAA 598
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 571 TCAACAATTACCTAGTCCCTTTTGTCGCGGCTCAAGCAAGACTAACACAAACTCCTGAAA 630
Query 599 TTTTTGTTGATGACATGATTAGCCACCTCCGCAACCAGCTCAAGAGATTATATGATATGG 658
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 CTTTCGTCGATGACATGATTAGCCACCTCCGCAACCAGCTCAAGAGATTATATGATATGG 690
Query 659 ATGCTCGGAAATTTGTGGTGGGAAATGTGGCTCCGATCGGATGTATACCATACCAGAAAT 718
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 691 ACGCTCGGAAATTTGTGGTGGGAAATGTGGCTCCTATTGGATGTATACCATACCAGAAAT 750
Query 719 CGATCAATCAACTAAACGATAAGCAGTGTGTTGATTTGGCAAACAAACTGGCTCTTCAGT 778
||||||||||| | |||||||| |||||||||||||| ||||||||||||||| |||| |
Sbjct 751 CGATCAATCAATTGAACGATAAACAGTGTGTTGATTTAGCAAACAAACTGGCTATTCAAT 810
Query 779 ACAATGCTCGTCTCAAAGATCTCTTGATGGTGGAATTGAAAGACAGTCTCAAAGACGCAC 838
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 811 ACAATGCTCGTCTCAAAGATCTCTTGACGGTGGAATTGAAAGATAGTCTCAAAGACGCAC 870
Query 839 ACTTCGTTTATGCCAACGTTTATGATTTATTCATGGACCTCATTGTCAACTTCAAAGACT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 ACTTCGTTTATGCCAACGTTTATGATTTATTCATGGACCTCATTGTCAACTTCAAAGACT 930
Query 899 ACGGGTTTAGGACGGCGAGTGAGGCGTGTTGTGAGACGAGAGGGAGATTGGCGGGGATAT 958
|||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 931 ACGGGTTTAGGACGGCAAGTGAGGCGTGTTGCGAAACGAGAGGGAGATTGGCGGGGATAT 990
Query 959 TGCCATGTGGACCAACGTCGAGCCTTTGTACGGACCGGTCAAAGCATGTGTTCTGGGACG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 TGCCATGTGGACCAACGTCGAGCCTTTGTACGGACCGGTCAAAGCATGTGTTCTGGGACG 1050
Query 1019 CGTACCATCCTAGCGAAGCCGCTAATCTTCTCATTGCTGACAAATTACTCTACGGTGACT 1078
|||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1051 CGTACCATCCTACCGAAGCCGCTAATCTTCTTATTGCTGACAAATTACTTTACGGAGACT 1110
Query 1079 CCAAATTCGTCACTCCCTTTAACCTCCTCCACCTTCGTGACCTTTGA 1125
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CCAAATTCGTCACTCCCTTTAACCTCCTCCACCTTCGTGACCTTTGA 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5