BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348150
Length=2295
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50420.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2806 0.0
AT3G50410.1 | Symbols: OBP1 | OBF binding protein 1 | chr3:1870... 326 8e-88
> AT3G50420.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:18710871-18713649 REVERSE LENGTH=2385
Length=2385
Score = 2806 bits (1519), Expect = 0.0
Identities = 1896/2082 (91%), Gaps = 10/2082 (0%)
Strand=Plus/Plus
Query 1 ATGCCACTGAACGAAATAGCTTCGTCTGTAGTAGAACTTACACGGAAATGCGTCTCGATC 60
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 262 ATGCCACTGAACGAAATAGCTTCTTCCGTTGTAGAACTTACACGGAAATGCGTCTCGATC 321
Query 61 ACGGCACTAAAACGGGCGTGTCAGCTCCACGCTATCATCCTCACCGCCGGCGCTGGCTCC 120
|||| ||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||
Sbjct 322 ACGGTACTAAAACGGGCGCGTCAGATCCACGCTCTCGTCCTCACCGCCGGCGCTGGCGCC 381
Query 121 GCTTCCGAATCTCCGTACAAAAATAACAATCTCATCTCAATGTATGTGAGGTGTGGTTCA 180
||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GCTACCGAGTCTCCGTACGCAAATAACAATCTCATCTCAATGTATGTGAGGTGTGGTTCA 441
Query 181 CTTGAACAAGCACGGAAACTGTTCGACAAAATGCCTGAGAGAAACGTAGTTTCTTACAAT 240
|| ||||||||||||||| ||||||||||||||||| | ||||||||||||||||| |||
Sbjct 442 CTGGAACAAGCACGGAAAGTGTTCGACAAAATGCCTCACAGAAACGTAGTTTCTTATAAT 501
Query 241 GCACTCTATTCGGCGTATTCCCGGAACCTAGATTACGCAAGTTATGCGTTTAGTCTGATA 300
|| || |||||||||||||||||||||| ||||| ||||||||||||||| ||| | |
Sbjct 502 GCGCTTTATTCGGCGTATTCCCGGAACCCAGATTTTGCAAGTTATGCGTTTCCTCTAACA 561
Query 301 AATCAAATGGCATCTGAATCCTTGAAGCCCAATAGTTCGACTTTCACTAGCTTAGTGCAA 360
| || ||||| | ||| | | |||||||||||||||| |||||||||||||||||||||
Sbjct 562 ACCCATATGGCGTTTGAGTACGTGAAGCCCAATAGTTCAACTTTCACTAGCTTAGTGCAA 621
Query 361 GTATGTACTGTGCTTGAGGATGTTTTGATGGGGTCATTACTACATTCGCAGATTATAAAG 420
|||||| ||||||||||||||||||| |||||||||| | || | |||||||||||||||
Sbjct 622 GTATGTGCTGTGCTTGAGGATGTTTTAATGGGGTCATCATTAAACTCGCAGATTATAAAG 681
Query 421 CTTGGATATTCAGATAATGTGGTTGTCCAGACATCGGTTTTGGGGATGTACTCCAGTTGC 480
||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 682 CTTGGTTATTCAGATAATGTAGTTGTCCAGACATCGGTTTTGGGGATGTACTCTAGTTGC 741
Query 481 GGGGACTTAGAATCTGCGAGGAGAATCTTTGAGTGTGTAAATGGCGGAGATGCGGTTGCT 540
|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 742 GGGGACTTAGAATCTGCGAGGAGAATATTTGACTGTGTAAATAATAGAGATGCGGTTGCT 801
Query 541 TGGAACACAATGATAGTTGGGATTTTTAGAAATGATAAGATAGAAGATGGGCTTATGCTC 600
|||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| ||
Sbjct 802 TGGAACACAATGATAGTTGGGAGTTTGAAAAATGATAAGATAGAAGATGGGCTTATGTTC 861
Query 601 TTTAGAAGCATGTTGATGTCTGGTGTTGATCCTTCGCAGTTCACGTATTCGATGGTGCTG 660
||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 862 TTTCGAAACATGTTGATGTCTGGTGTTGATCCAACGCAGTTCACGTATTCGATTGTGTTG 921
Query 661 AATGCTTGTAGTAAACTGGGAAGCTATAGATATTCTGTAGGAAAATTAATCCATGCCCGG 720
|||| |||||||||| ||||||||||| | ||| || ||| ||||||||||||||
Sbjct 922 AATGGTTGTAGTAAATTGGGAAGCTAT---T-CACTG--GGGAAACTAATCCATGCCCGG 975
Query 721 ATGATAGTCTCAGATATTTTAGCTGATTTACCTGTAGAAAATGCTCTTCTTGACATGTAT 780
|| |||||||| |||| |||||||||||||||| |||| |||||||||||||||||||||
Sbjct 976 ATAATAGTCTCTGATAGTTTAGCTGATTTACCTCTAGATAATGCTCTTCTTGACATGTAT 1035
Query 781 TGCAGTTGTGGGGACATGAAAGAAGCATTTTATGTGTTTGGGAAGATACATAACCCAAAT 840
||||||||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 1036 TGCAGTTGTGGAGACATGAGGGAAGCATTTTATGTGTTTGGGAGGATTCATAACCCAAAT 1095
Query 841 TTGGTTTCATGGAACTCGATTATTTCGGGGTGCTCAGAAAACGGCTTTGGAGAGCAAGTG 900
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1096 TTGGTTTCATGGAACTCGATTATTTCAGGGTGCTCAGAAAACGGCTTTGGAGAGCAAGCG 1155
Query 901 ATTCTTATGTATAGAAGGTTGCTGAGGATATCCACACCTCGACCGGATGAATATACTTTC 960
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1156 ATGCTTATGTATAGAAGGTTGCTGAGGATGTCCACACCTCGGCCGGATGAATATACTTTC 1215
Query 961 TCTGCTGCTATACCTGCGACAGCTGAACCAGAAAAATTTATTCATGGGAAGCTTCTTCAC 1020
|||||||||||| |||||||||| |||||||||| |||| ||||||||||||||||||||
Sbjct 1216 TCTGCTGCTATATCTGCGACAGCGGAACCAGAAAGATTTGTTCATGGGAAGCTTCTTCAC 1275
Query 1021 GGACAAGTAACAAAATTAGGATATGAAAGGAGTGTGTTTGTTGGAACAACACTCTTGTCC 1080
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1276 GGACAAGTAACGAAATTAGGATATGAAAGGAGTGTTTTTGTTGGAACAACACTATTGTCG 1335
Query 1081 ATGTACTTCAAAAACGGGGAAGCTGAATCTGCACAGAAGGCGTTTGGTGTGATCACTGAA 1140
||||||||||| ||| |||||||||||||||||||||||| ||||| |||||| | |||
Sbjct 1336 ATGTACTTCAAGAACAGGGAAGCTGAATCTGCACAGAAGGTGTTTGATGTGATGAAGGAA 1395
Query 1141 AGGGATGTTGTTCTCTGGACTGAGATGATTGTTGGGGAATCTAGAGTGGGAAACAGTG-A 1199
||||||||||||||||||||||||||||| || ||| | |||||| | |||||||| | |
Sbjct 1396 AGGGATGTTGTTCTCTGGACTGAGATGATCGTAGGGCATTCTAGATTAGGAAACAGCGAA 1455
Query 1200 GTATGCAGTCCAACTCTTTATTGAAATGTACCGAGaaaaaaaTAGAACTGATGGTTTTTC 1259
|| || |||||| |||| |||||||||||| ||||||| ||||||| ||||||||||||
Sbjct 1456 TTA-GCGGTCCAATTCTTCATTGAAATGTACAGAGAAAAGAATAGAAGTGATGGTTTTTC 1514
Query 1260 CCTGAGTAGTGTTTTAGGTGCATGTTCAGATATGGCGATGCTAAGACAAGGTCAAGTGTT 1319
|||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 1515 CCTGAGTAGTGTCATAGGAGCATGTTCAGATATGGCAATGCTAAGACAAGGTGAAGTTTT 1574
Query 1320 CCATTCTCTTGCCATTAA-GACGGGGTTCGACAATGTTATGTCAGTATCCGGAGCACTAG 1378
||||| |||||||| ||| |||||| ||||| |||||||||||||| ||||| ||||
Sbjct 1575 CCATTGTCTTGCCA-TAAGGACGGGATTCGATTGTGTTATGTCAGTATGTGGAGCGCTAG 1633
Query 1379 TAGACATGTATGGGAAAAACGGCAAATACGAAACTGCAGAATCAATATTCTCTCTTGTTT 1438
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 1634 TAGACATGTATGGGAAAAACGGTAAATACGAAACTGCAGAAACAATATTCTCTCTTGCTT 1693
Query 1439 CAAATCCAGATTTGAAATGCTGGAACTCAATGCTAGGAGCTTATAGTCAGCATGGAATGG 1498
||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||
Sbjct 1694 CAAATCCAGATTTGAAATGTTGGAATTCGATGCTAGGTGCTTATAGTCAGCATGGAATGG 1753
Query 1499 TAGAAAAGGCTCTGAGTTTCTTCGAACAAATACTAGAAAACGGATTCACCCCGGATGCTG 1558
||||||| |||||||| |||||||| |||||||||||||||||||||| || |||||||
Sbjct 1754 TAGAAAAAGCTCTGAGCTTCTTCGAGCAAATACTAGAAAACGGATTCATGCCAGATGCTG 1813
Query 1559 TAACATACTTGTCTTTATTAGCAGCCTGCAGCCACAGGGGATCAACGCAGGAAGGTGAGT 1618
| |||||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct 1814 TTACATACTTGTCTTTATTAGCAGCCTGTAGCCACAGGGGATCAACGTTGCAAGGTAAGT 1873
Query 1619 TCCTGTGGAATCAAATGAAGGAACAGGGCATCAAAGCAGGGTTTAAACACTACTCTTGCA 1678
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1874 TCCTATGGAACCAAATGAAGGAACAGGGCATCAAAGCAGGGTTTAAGCACTACTCTTGCA 1933
Query 1679 TGGTGAGTTTGGTATCCAAAGCTGGGTTATTAGGCGAAGCACTGGAACTGATAAAACAAT 1738
|||||| ||| ||||| |||||||||||| ||| ||| ||||||||||||||| ||||||
Sbjct 1934 TGGTGAATTTAGTATCAAAAGCTGGGTTAGTAGACGAGGCACTGGAACTGATAGAACAAT 1993
Query 1739 CTCCTCCCGGGAACAACCAAGCAGAGCTCTGGAGAACTCTGCTAAGCGCCTGTGTTAACG 1798
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1994 CTCCTCCCGGGAACAACCAAGCAGAGCTCTGGAGAACTCTGCTAAGCGCATGTGTTAACA 2053
Query 1799 CAAGAAACTTGCAGATTGGACTATATGCAGCTGATCAGATCCTGAAACTTGATCCAGAAG 1858
|||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||
Sbjct 2054 CAAGAAACTTGCAGATAGGACTATATGCAGCTGAGCAAATACTGAAACTTGATCCAGAAG 2113
Query 1859 ACACTGCAACACACATTCTACTATCTAATCTGTATGCGGTGAATGGGAGATGGAAGGATG 1918
||||||||||||||||||||||||| ||| | ||||| || |||||||||||| ||||||
Sbjct 2114 ACACTGCAACACACATTCTACTATCAAATTTATATGCAGTAAATGGGAGATGGGAGGATG 2173
Query 1919 TTGCAGAGATGAGAAGGAAGATTAGAGGATTAGCTTCAGCTAAAGATCCCGGATTGAGCT 1978
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 2174 TTGCAGAGATGAGAAGGAAGATTAGAGGATTAGCTTCATCTAAAGATCCAGGATTGAGCT 2233
Query 1979 GGATTGAAGTGAACAACAACAATACACACGTTTTCTCCTCTGGAGACCAGTCTAACCCAG 2038
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 2234 GGATTGAAGTGAACAACAACAATACACAAGTTTTCTCCTCAGGAGACCAGTCGAACCCAG 2293
Query 2039 AAATTATAACTCAAGCTCACGATGAATTACATAGATTAAAGA 2080
|| || ||| ||||||||| ||||||||| ||||||||||||
Sbjct 2294 AAGTTGTAAGTCAAGCTCAAGATGAATTAAATAGATTAAAGA 2335
> AT3G50410.1 | Symbols: OBP1 | OBF binding protein 1 | chr3:18709748-18710760
FORWARD LENGTH=1013
Length=1013
Score = 326 bits (176), Expect = 8e-88
Identities = 203/215 (94%), Gaps = 5/215 (2%)
Strand=Plus/Minus
Query 2085 ACCAACAGTTGAAAACGGCCACATCGCTCTTCCAAGTCCAAAGCTGACGTCATCAAAACC 2144
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 715 ACCAACAGTTGAAAACGGCCACATCGCTCTTCCGAGTCCAAAGCTGACGTCATCAAAACC 656
Query 2145 CGACCCGAGTCCGATTCCGAATCCTCCGAGT-CCAATAACCGAACCGGATCCATGTGTAG 2203
|||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||
Sbjct 655 CGACCCGAGTCCGATTCCAAAACCTCCGA-TACCAATAACCGAACCGGATCCATGCGTAG 597
Query 2204 ACGTCGCAGCAGCGTTATGGTTCAACAGAG---AGGTGAAACTTCCACACAGAGATAAAG 2260
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 596 CCGTCGCAGCAGCGTTATGGTTCAACAGAGTGGAGGTGAAACTTCCACAGAGAGATAAAG 537
Query 2261 CACTTCCCTTTCCGTCGCTTTCAGTTACGGTGTGA 2295
|||||||||||||||||||||||||||| ||||||
Sbjct 536 CACTTCCCTTTCCGTCGCTTTCAGTTACTGTGTGA 502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113905036605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5