BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg348154

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50450.1 | Symbols: HR1 | homolog of RPW8 1 | chr3:18722415-...   843    0.0  


> AT3G50450.1 | Symbols: HR1 | homolog of RPW8 1 | chr3:18722415-18723135 
FORWARD LENGTH=570
Length=570

 Score =  843 bits (456),  Expect = 0.0
 Identities = 535/573 (93%), Gaps = 6/573 (1%)
 Strand=Plus/Plus

Query  1    ATGCCTCTTGTTGAGCTTTTTGCAGGTGCTGCTCTTGGATTTG-CCCTCCAACTCCTTCA  59
            |||||||||||||||||| || || |||||||||||||| ||| ||||||||||||||||
Sbjct  1    ATGCCTCTTGTTGAGCTTCTTACAAGTGCTGCTCTTGGA-TTGTCCCTCCAACTCCTTCA  59

Query  60   CGAGGCCATCATAAGAGCCAAAGAGAGATCCTTAATCACAAGATGTATATTGGACCGTCT  119
            ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  60   CGACGCCATCATAAGAGCCAAGGAGAGATCCTTAATCACAAGATGTATATTGGACCGTCT  119

Query  120  CGATGCTACAATCTATAAGATCACTCCATTTGTCAATAAGATCGATA-CGTGCACCGAAG  178
            |||||||||| || ||||||| ||||||||||||| ||||||||||| | | ||||||||
Sbjct  120  CGATGCTACACTCCATAAGATAACTCCATTTGTCATTAAGATCGATACCCT-CACCGAAG  178

Query  179  AAGTCGATGAACCTTTGAGGAAAGTCATCGAAGAGCTTAAATGTCTTCTCGAGAAAGCCA  238
            |||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct  179  AAGTCGATGAACCTTTCAGAAAAGTCATCGAAGAGCTTAAACGTCTTCTCGAGAAAGCCA  238

Query  239  TTCGTCTTGTTGAGGCTTATGCAGAGCTTAAACGCAGAAACTTACTCAGGAAATATAGGT  298
            ||||||| ||||| |||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct  239  TTCGTCTCGTTGATGCTTATGCGGAGCTTAAACTCCGAAACTTACTCAGGAAATATAGGT  298

Query  299  ACAAGAGAAGAATCAAGGAGTTGGA-TGCTTCTTTGAGATGGATGGTAGATGTGGATGTT  357
            ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct  299  ACAAGAGAAGAATCAAGGAGTTGGACT-CTTCTTTGAGATGGATGATAGATGTGGATGTT  357

Query  358  CAAGTCAATCAATGGCTGGATATCAAAAAACTTATGGGTAAGATGTCTGAAATGAATACG  417
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  358  CAAGTCAATCAATGGCTGGATATCAAAAAACTTATGGGTAAGATGTCTGAAATGAACACT  417

Query  418  AAACTTGATGAGATTACGAGTCAACCAATAGATATAATCGAAGCAACTGGTCGATCTTCT  477
            ||||| ||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct  418  AAACTCGATGATATTACGCGTCAACCAATGGATATCATCGAAGCAACTGGTCGATCTTCT  477

Query  478  GAAGAAGATGGATGCTCAAAGCCAAAGATTGATATACATTTTAGATGGAAAAAACAGACC  537
            ||||||||||||||| ||||||||| |||||||||||| ||| |||||||||| ||||||
Sbjct  478  GAAGAAGATGGATGCACAAAGCCAACGATTGATATACACTTTCGATGGAAAAACCAGACC  537

Query  538  AAAGAGCACGAGATCCGGTTCATCTTCAATTGA  570
            ||||||||||||||||||||||||||||| |||
Sbjct  538  AAAGAGCACGAGATCCGGTTCATCTTCAAATGA  570



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27377610115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5