BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg348171 Length=501 Score E Sequences producing significant alignments: (Bits) Value AT3G50640.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 771 0.0 > AT3G50640.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66800.1); Has 67 Blast hits to 67 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18803803-18804663 REVERSE LENGTH=749 Length=749 Score = 771 bits (417), Expect = 0.0 Identities = 475/503 (94%), Gaps = 4/503 (1%) Strand=Plus/Plus Query 1 ATGGCACGTTTAGAAATGCACAACTCCATGAATGGTGCTGCAAGAATCTCATTCTCTAAC 60 |||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||| Sbjct 25 ATGGCACGCTTAGAAATGCACAACTCCATGAATGGTGCTGCTAGAATCTCTTTTTCTAAC 84 Query 61 GAGTTTGTCGAGATCAGATCGGAGAAGAGTAATGCTAAGACCAACAACATGAACTCAAGA 120 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 85 GAGTTTGTCGAGATCAGATCGGAGAAGAGTAATGCTAAGAGCAACAACATCAACTCGAGA 144 Query 121 AGCTCTTTCTCCATGCCCTCTGCTGATTTCGCTTTCTCAGTCACCGATTACTCGATGATT 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 145 AGCTCTTTCTCCATGCCCTCAGCTGATTTCGCTTTCTCAGTCACCGATTACTCGATGATT 204 Query 181 CCCGCCGATGAAATCTTTCTCAAAGGAAAGATTTTACCTCTCAAGGAGACCAGTCACGTC 240 ||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| Sbjct 205 CCCGCCGATGAAATCTTCCTCAAAGGAAAGATTTTACCTTTTAAGGAGACCAGTCACGTC 264 Query 241 CATAGGACCTTAGGAGAAGAGCTTCTTATTGAAGAAGAGGGTTCTGTTGTTGATGGCAAG 300 |||||||||||||||||||||||||||| |||||| ||||||||| | || ||||| || Sbjct 265 CATAGGACCTTAGGAGAAGAGCTTCTTACTGAAGAGGAGGGTTCTATGGTCGATGGTAAC 324 Query 301 AACTT-CTCCCTCAGGCCAATATTGTTGTCTTCTTCATCCTTTTCCACAAAGGGCACGTG 359 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 A-CTTTCTCCCTCAGGCCAATATTGTTGTCTTCTTCATCCTTTTCCACAAAGGGCACGTG 383 Query 360 GAGAGAGCTATTGGGCCTTAAGAGGACCCATTGT-AGATCTAAGAAGACTGATAAAGTCA 418 ||| ||||| ||||| ||||||||||||||| || ||||||||||||||||||||||||| Sbjct 384 GAGGGAGCTTTTGGGACTTAAGAGGACCCAT-GTTAGATCTAAGAAGACTGATAAAGTCA 442 Query 419 ATGAGGAAGTGTTAACTCAAGATCACAAAATAATCTCAGGAAGTGTTGCGACGAGGGAGT 478 ||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| Sbjct 443 ATGAGGAAGTGTTAAGTCAAGATCACAAAATAATCTCAGGAAATGTTGCAACGAGGGAGT 502 Query 479 GTCAAGTTGCAGATACAAGATGA 501 ||||||||||||||||||||||| Sbjct 503 GTCAAGTTGCAGATACAAGATGA 525 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23911453972 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5