BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg348171

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50640.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   771    0.0  


> AT3G50640.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G66800.1); 
Has 67 Blast hits to 67 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18803803-18804663 
REVERSE LENGTH=749
Length=749

 Score =  771 bits (417),  Expect = 0.0
 Identities = 475/503 (94%), Gaps = 4/503 (1%)
 Strand=Plus/Plus

Query  1    ATGGCACGTTTAGAAATGCACAACTCCATGAATGGTGCTGCAAGAATCTCATTCTCTAAC  60
            |||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct  25   ATGGCACGCTTAGAAATGCACAACTCCATGAATGGTGCTGCTAGAATCTCTTTTTCTAAC  84

Query  61   GAGTTTGTCGAGATCAGATCGGAGAAGAGTAATGCTAAGACCAACAACATGAACTCAAGA  120
            |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct  85   GAGTTTGTCGAGATCAGATCGGAGAAGAGTAATGCTAAGAGCAACAACATCAACTCGAGA  144

Query  121  AGCTCTTTCTCCATGCCCTCTGCTGATTTCGCTTTCTCAGTCACCGATTACTCGATGATT  180
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  145  AGCTCTTTCTCCATGCCCTCAGCTGATTTCGCTTTCTCAGTCACCGATTACTCGATGATT  204

Query  181  CCCGCCGATGAAATCTTTCTCAAAGGAAAGATTTTACCTCTCAAGGAGACCAGTCACGTC  240
            ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct  205  CCCGCCGATGAAATCTTCCTCAAAGGAAAGATTTTACCTTTTAAGGAGACCAGTCACGTC  264

Query  241  CATAGGACCTTAGGAGAAGAGCTTCTTATTGAAGAAGAGGGTTCTGTTGTTGATGGCAAG  300
            |||||||||||||||||||||||||||| |||||| ||||||||| | || ||||| || 
Sbjct  265  CATAGGACCTTAGGAGAAGAGCTTCTTACTGAAGAGGAGGGTTCTATGGTCGATGGTAAC  324

Query  301  AACTT-CTCCCTCAGGCCAATATTGTTGTCTTCTTCATCCTTTTCCACAAAGGGCACGTG  359
            | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  325  A-CTTTCTCCCTCAGGCCAATATTGTTGTCTTCTTCATCCTTTTCCACAAAGGGCACGTG  383

Query  360  GAGAGAGCTATTGGGCCTTAAGAGGACCCATTGT-AGATCTAAGAAGACTGATAAAGTCA  418
            ||| ||||| ||||| ||||||||||||||| || |||||||||||||||||||||||||
Sbjct  384  GAGGGAGCTTTTGGGACTTAAGAGGACCCAT-GTTAGATCTAAGAAGACTGATAAAGTCA  442

Query  419  ATGAGGAAGTGTTAACTCAAGATCACAAAATAATCTCAGGAAGTGTTGCGACGAGGGAGT  478
            ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct  443  ATGAGGAAGTGTTAAGTCAAGATCACAAAATAATCTCAGGAAATGTTGCAACGAGGGAGT  502

Query  479  GTCAAGTTGCAGATACAAGATGA  501
            |||||||||||||||||||||||
Sbjct  503  GTCAAGTTGCAGATACAAGATGA  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5