BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348240
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51360.1 | Symbols: | Eukaryotic aspartyl protease family p... 1711 0.0
> AT3G51360.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:19064294-19066560 REVERSE LENGTH=1467
Length=1467
Score = 1711 bits (926), Expect = 0.0
Identities = 1133/1228 (92%), Gaps = 33/1228 (3%)
Strand=Plus/Plus
Query 327 TCTGCATTATGCGAATGTGACGATAGGGACACCGGCTCAATGGTTCTTGGTGGCATTAGA 386
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TCTACATTATGCGAATGTGACGATAGGGACACCGGCTCAATGGTTCTTGGTGGCATTAGA 320
Query 387 CACAGGAAGTGATTTGTTTTGGTTACCTTGCAATTGCAATTCCACTTGCGTACGGAGTAT 446
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 321 CACAGGCAGTGATTTGTTTTGGTTACCTTGCAATTGCAATTCCACTTGTGTACGGAGTAT 380
Query 447 GGAGACTGACCAAGGCGAGACACACATGAATGCACAGAGGATAAGGCTCAACATCTACAA 506
||||||||||||||||||| | |||| | | || ||||||||||||||
Sbjct 381 GGAGACTGACCAAGGCGAG------A-GAAT------A--A-AA--CTCAACATCTACAA 422
Query 507 CCCAAGCATATCAACATCAAGCTCAAAGGTTACGTGCAATAGCACACTCTGTGCATTAAG 566
||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CCCCAGCAAATCAAAATCAAGCTCAAAGGTTACGTGCAATAGCACACTCTGTGCATTAAG 482
Query 567 AAACAGATGCATTTCTCCGCTCAGCGATTGTCCTTACAGAATCCGATATCTCTCGCCGGG 626
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 483 AAACAGATGCATTTCTCCGGTCAGCGATTGTCCTTACAGAATCCGATATCTCTCTCCGGG 542
Query 627 AAGCAAAAGCACAGGTGTGTTGGTGGAGGATGTGATCCACATGAGCACAGAAGAAGGAGA 686
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 543 AAGCAAAAGTACAGGTGTGTTGGTGGAGGATGTGATCCACATGAGCACTGAAGAAGGAGA 602
Query 687 AGCTAGAGATGCTCGGATCACATTCGGATGTAGTGAGACCCAACTAGGGTTGTTCCAAGA 746
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 603 AGCTAGAGATGCTCGGATCACATTCGGATGTAGTGAGTCCCAACTAGGGTTGTTCAAAGA 662
Query 747 AGTGGCTGTAAATGGTATAATGGGACTTGCAATGGCCGACATAGCGGTTCCAAACATGTT 806
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 663 AGTGGCTGTAAATGGTATAATGGGACTTGCAATAGCCGACATAGCGGTTCCAAACATGTT 722
Query 807 GGTTAAAGCCGGTGTGGCGTCAGACTCTTTCTCAATGTGTTTTGGTCCTAATGGGAAAGG 866
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GGTTAAAGCCGGTGTCGCGTCAGACTCTTTCTCAATGTGTTTTGGTCCTAATGGGAAAGG 782
Query 867 AACAATCAGTTTCGGAGACAAAGGTAGCTCAGACCAGCATGAGACTCCATTGGGTGGCAC 926
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 783 AACAATCAGTTTCGGAGACAAAGGTAGCTCAGACCAGCTTGAGACTCCATTGAGTGGCAC 842
Query 927 CATCTCTCCGCTGTTTTACGATGTGAGCATCACCAAATTCAAGGTAGGAAAAGTGACGGT 986
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 843 CATCTCACCGATGTTTTACGATGTGAGCATCACCAAATTCAAGGTAGGAAAAGTTACGGT 902
Query 987 GGAAACAAAATTCAGCGCGATATTTGACTCTGGAACCGCGGTTACTTGGCTGCTCGATCC 1046
||| ||| |||||| ||||| |||||||||||||||||||||||| |||||| |||| ||
Sbjct 903 GGATACAGAATTCACCGCGACATTTGACTCTGGAACCGCGGTTACATGGCTGATCGAGCC 962
Query 1047 GTACTACACTGCTCTAACAACAAACTTTCATCTCTCTGTACCAGACAGACGACTTCCAGC 1106
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 963 TTACTACACTGCTCTAACAACAAACTTTCATCTCTCTGTACCAGACAGACGACTTTC-GA 1021
Query 1107 AAA-TGTGGATAGCACCTTT-GAGTTTTGCTACATTATTACATCAACCTCAGATGAAGAG 1164
||| |||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 1022 AAAGTGTGGATAGC-CCTTTTGAGTTTTGCTACATTATCACATCAACTTCAGATGAAGAT 1080
Query 1165 AAGCTTCCTTCAATTAGCTTTGAAATGAAAGGAGGAGCTGCTTATGATGTTTTCAGCCCC 1224
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAGCTTCCTTCAGTTAGCTTTGAGATGAAAGGAGGAGCTGCTTATGATGTTTTCAGCCCC 1140
Query 1225 ATACTTGTCTTCGACACCTCCGATGGTAGTTTTCAAGTCTACTGCTTGGCCGTTTTGAAG 1284
||||||||||||||||| ||||||||||||||||||||||| || ||||| || || |||
Sbjct 1141 ATACTTGTCTTCGACACTTCCGATGGTAGTTTTCAAGTCTATTGTTTGGCTGTCTTAAAG 1200
Query 1285 CAAGATAAAGCTGATTTCAACATCATCGGACAAAACTTCATGACCAACTACAGAATCGTC 1344
|||| ||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1201 CAAGTTAATGCTGACTTCAGCATCATCGGACAAAATTTCATGACCAACTACAGAATCGTC 1260
Query 1345 CATGATCGCGAGAGAATGATCTTGGGATGGAAAAAATCCAATTGTAATGATACTAACGGT 1404
|| ||||| ||||||| |||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1261 CACGATCGTGAGAGAAGGATCTTAGGATGGAAAAAATCTAATTGTAATGATACTAACGGT 1320
Query 1405 TTCACGGGACCTACCGATT---CA---CCGCCATCGCTGCCGC-AATTGCCGTCTCCAAG 1457
||||| |||||||||| || || ||||||||| || | | || | ||||||||||
Sbjct 1321 TTCACAGGACCTACCGCTTTAGCAAAACCGCCATCGATGGCACCAAC-GTCGTCTCCAAG 1379
Query 1458 AACCATTAACCCTTCCAGCCGTTTGAACCCTCTGGCTGC---TTCTTCACTTTTCATCAT 1514
|||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1380 AACCATCAACCTTTCCAGTCGTTTGAACCCTCTGGCTGCGGCTTCTTCACTTTTCATCAT 1439
Query 1515 TTGCTTCATTTCTTTTATATGTTTGTGA 1542
|||||||||||||||| ||| |||||||
Sbjct 1440 TTGCTTCATTTCTTTTGTATCTTTGTGA 1467
Score = 394 bits (213), Expect = 1e-108
Identities = 245/260 (94%), Gaps = 3/260 (1%)
Strand=Plus/Plus
Query 31 ATGTTTCAGTTTGGATTCCTCTGTATTATGAGTTTGGGATTGGCTTCTTCTGTTTCAGGA 90
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTCAGTTTGGATTCCTCTGTGCTATGAGTTTGGGATTGGCTTCTTCTGTTTCAGGA 60
Query 91 TCACTCTCCTTTGAAATCCACCATAGATTCTCAGAGCAAGTCAAAACGGTTCTAGGTGGC 150
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCACTTTCCTTTGAAATTCACCATAGATTCTCAGAGCAAGTCAAAACCGTTCTAGGTGGC 120
Query 151 CATGGCTTGCCTGAAATGGGCAGCCTCGACTACTACAAGGCGTTGGTTCACCGTGATCGA 210
||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 121 CATGGTTTGCCTGAAATGGGCAGCCTAGACTACTACAAGGCCTTGGTTCATCGTGATCGA 180
Query 211 GGTCGGCGGCTAACAT-C--CAACAACAATCAGACAACTATTTCTTTCGCTCAAGGCAAC 267
||||| | |||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTCGCCAGCTAACCTCCAACAACAACAATCAGACAACTATTTCTTTCGCTCAAGGCAAC 240
Query 268 TCCACCGAAGAAATCAGTTT 287
||||||||||||||||||||
Sbjct 241 TCCACCGAAGAAATCAGTTT 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104026220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5