BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348254
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51540.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 981 0.0
AT2G04120.1 | Symbols: | pseudogene, RAS-related GTP binding p... 252 7e-66
AT4G08190.1 | Symbols: | P-loop containing nucleoside triphosp... 132 1e-29
> AT3G51540.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G08670.1);
Has 22744 Blast hits to 9965 proteins in 783 species: Archae
- 64; Bacteria - 2760; Metazoa - 8515; Fungi - 3864; Plants
- 499; Viruses - 702; Other Eukaryotes - 6340 (source: NCBI
BLink). | chr3:19115342-19117210 FORWARD LENGTH=1317
Length=1317
Score = 981 bits (531), Expect = 0.0
Identities = 621/664 (94%), Gaps = 7/664 (1%)
Strand=Plus/Plus
Query 1 ATGAGTGATCGGAGTCTGAAAAAGTCTCTTGCCGGAAAAAGCAACCGCCCGGCCGATGAG 60
||||||||||||||||||||||||||||| |||| |||||||| |||| ||| ||||||
Sbjct 1 ATGAGTGATCGGAGTCTGAAAAAGTCTCTCCCCGGTAAAAGCAATCGCCAGGCGGATGAG 60
Query 61 AATTTTGATCTTTTCTCAGTCAACCGTGGAACTTCTTTAGATGTTTTGATTAAACCAGGA 120
||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AATTTGGATCTCTTCTCAGTCAACCGTGGAACTTCTTTGGATGTTTTGATTAAACCAGGA 120
Query 121 AGACATTCTTTCCAACAAGCTAAAGTTGCTAAGCATGGCCCTGAAGATGACAAGAATCAC 180
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 121 AGACATTCTTTCCAACAAGCTAAAGTTGCTAAGCATGGACCTGATGATGACAATAATCAC 180
Query 181 AAGATACATGCAAATGAACCGCTTTATACCATTGCAGAAGTTCCATTAGGAGATCTTTCT 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATATACATGCAAATGAACCGCTTTATACCATTGCAGAAGTTCCATTAGGAGATCTTTCT 240
Query 241 AGATTGGTTCTAGAAGCTAGAAACACAACTTCCAAGCTTCAGTCCATAACCACTAAAAGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 AGATTGGTTCTAGAAGCTAGAAACACAACTTCCAAGCTTCAGTCCATAACCACTACAAGG 300
Query 301 GCTGCTTTAAGGAGCGAGAGTGATCCATCTTCAAGACCAACCAGAAGCGGTTCAACAATT 360
| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 GTTCCTTTAAGGAGCGAGAGTGATCCATCTTCAAGACCAACGAGAAGCGGTTCAACAATT 360
Query 361 CGTCCCTCCAACATTCCCACCATCAGATCCTCATCGGTCCCCAAGAAGACAACAACAACA 420
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CGTCCCTCCAACATTCCCACTATCAGATCCTCTTCGGTCCCCAAGAAGACAACAACAACA 420
Query 421 ACAATTTCA-GCTTCAGCTTCAGCTTCTTCTCCAAAACGAAATGTCTCACGATCTTTAAC 479
||| |||| ||||||||||| | ||||||||||||| ||| |||||| |||||||| ||
Sbjct 421 -CAAATTCAAGCTTCAGCTTCGGTTTCTTCTCCAAAAAGAACTGTCTCTCGATCTTTGAC 479
Query 480 TCCCTTATCACGCAAAACACCATCACCATCCTCAACTCCTTCAAGAATCAGTACAACTAC 539
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 TCCCTCATCACGCAAAACACCATCACCAACCTCAACTCCTTCAAGAATCAGTACAACTAC 539
Query 540 TTCAACAAATCCTTCCTTCAATAA-AGCTGGAGACGCTCAACGATCAAGATCGTTGACTC 598
|||||| | |||||||||||| || ||||||||| |||||| ||||||||||||||||||
Sbjct 540 TTCAACCACTCCTTCCTTCAA-AACAGCTGGAGATGCTCAAAGATCAAGATCGTTGACTC 598
Query 599 CAAGATCAAAGCCTCAGATTGCAGCAAATTCAAGTA--AG-ACCAATGTTCGTTCTTCAT 655
||||| ||||||||||||||||||||||| |||||| || |||||||| |||||||| |
Sbjct 599 CAAGAGCAAAGCCTCAGATTGCAGCAAATGCAAGTAGTAGGACCAATGTGCGTTCTTCGT 658
Query 656 CTGT 659
||||
Sbjct 659 CTGT 662
Score = 942 bits (510), Expect = 0.0
Identities = 589/628 (94%), Gaps = 2/628 (0%)
Strand=Plus/Plus
Query 658 GTTTCAGCAACACCTCGGACACCACCAAGACTAAAAGAAACGGTCACTCTAGCATTCGGT 717
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||
Sbjct 691 GTTTCAGCAACACCTCGGACACCGCCAAGACTAAAAGAAACAGTCACTCTAGCGTTTGGT 750
Query 718 AGACCAGTGGGGAATGTTAATTCGCCAAAACGAAACACCTCACCGGATGTTACAAGAACG 777
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 751 AGACCAGTGGGTCATGTTAACTCGCCAAAACGAAACACCTCACCGGATGTTACAAGAACG 810
Query 778 AGGCCTAAAGGGCGCTCTGCTTCTCCTTCTCGGATTCCGACTTTTTCAGGCGTCTCGCAT 837
||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 811 AGGCCTAAAGGACGCTCTGCTTCTCCTTCTCTGATTCCGACTTTTTCAGGCACCTCACAT 870
Query 838 ACAACAGTAACTCCCAAATCTGTAAAGCCATCTGCCATTGTTGTGGATTCAACTAGGCCA 897
|||||| ||||||||| ||| ||||||||||||||| ||||| |||||||||||||||
Sbjct 871 ACAACAACAACTCCCAAGTCTATAAAGCCATCTGCCACTGTTGCCGATTCAACTAGGCCA 930
Query 898 GGAAGAAAATTGTCTAGAGCTTCGGTTCAAATGGCTATCAATCACTTGGACGTGGCACGA 957
||||| || ||||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 931 GGAAGGAAGTTGTCAAGAGCTTCTGTTCAAATGGCTATCAATCACTTGGACTTGGCACGA 990
Query 958 AATGGTAAAGTTAGTACACATACGTTTTCAAGCACTATGTTGTATCCACACAGCATCAGA 1017
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 991 AATGGTAAAGTTAGTACACATACGTTTTCAAGCCCAATGTTGTATCCACACAGCATCAGA 1050
Query 1018 TCTTCTTCTTCGGGTCTAAGAAAGCCGTGTGGTAGTAGTGAAGGCAGCTGCAGCAGCAGC 1077
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1051 TCTTCTTCTTCGGGTCTAAGAAAACCGTGTGGTAGTAGTGAAGGCAGCTGCAGCAGCAGC 1110
Query 1078 AACCATGAAGAGGAAGATGGAAGAAACTTAACGAAAGAAGG-AGCTAACACGGAGAATAA 1136
||||||||||||||||||||||||| ||||||||||||||| | | ||||| ||||| ||
Sbjct 1111 AACCATGAAGAGGAAGATGGAAGAAGCTTAACGAAAGAAGGGAAC-AACACAGAGAACAA 1169
Query 1137 GAAAGATAGTGCTCGTTACGACGCACTCTTGAATGTTAAAGATGTCAAGGATACAAACTG 1196
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 GAACGATAGTGCTCGTTACGACGCACTCTTGAATGTTAAAGATGTCAAGGATACAAACTG 1229
Query 1197 GCTGCTTAACATTGATGATGAATCTCATCAATCTCTCATCTTCGACAATGCTTTCGAATC 1256
||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 1230 GCTACTTAACATTGATGATGAATCTCCTCAATCTCTCATCTTCGACAATGCTTTTGACTC 1289
Query 1257 TCCTCCTGATCTATTCCCTCCTCTCTGA 1284
|||||||||||||||| |||||||||||
Sbjct 1290 TCCTCCTGATCTATTCTCTCCTCTCTGA 1317
> AT2G04120.1 | Symbols: | pseudogene, RAS-related GTP binding
protein, blastp match of 80% identity and 5.7e-32 P-value
to SP|Q39434|RAB2_BETVU Ras-related protein Rab2BV. (Sugar beet)
{Beta vulgaris} | chr2:1388194-1388947 FORWARD LENGTH=754
Length=754
Score = 252 bits (136), Expect = 7e-66
Identities = 161/173 (93%), Gaps = 2/173 (1%)
Strand=Plus/Plus
Query 945 GGACGTGGCACGAAATGGTAAAGTTAGTACACATACGTTTTCAAGCACTA-TGTTGTATC 1003
|||| ||||||||||| |||||||||||||||||| |||||||||||| | ||||||| |
Sbjct 126 GGACTTGGCACGAAATAGTAAAGTTAGTACACATATGTTTTCAAGCAC-AGTGTTGTACC 184
Query 1004 CACACAGCATCAGATCTTCTTCTTCGGGTCTAAGAAAGCCGTGTGGTAGTAGTGAAGGCA 1063
|||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 185 CACACAGCATCATATCTTCTTCTTTGGGTTTAAGAAAGCCGTGTGGTAGTAGTGAAGGCA 244
Query 1064 GCTGCAGCAGCAGCAACCATGAAGAGGAAGATGGAAGAAACTTAACGAAAGAA 1116
| ||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 245 GTTGCAGCAGCAGCAACCATGAAGAGGAAGATGGAAGAAGCTTAATGAAAGAA 297
> AT4G08190.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:5174523-5175476
REVERSE LENGTH=384
Length=384
Score = 132 bits (71), Expect = 1e-29
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1037 GAAAGCCGTGTGGTAGTAGTGAAGGCAGCTGCAGCAGCAGCAACCATGAAGAGGAAGATG 1096
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 116 GAAAGCCGTGTGGTAGTAGTGAAGGCAGTTGCAGCAGCAGCAACCATGAAGAGGAAGATG 175
Query 1097 GAAGAAACTTAACGAAAGAA 1116
|||||| ||||| |||||||
Sbjct 176 GAAGAAGCTTAATGAAAGAA 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5