BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg348272

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G51750.1 | Symbols:  | unknown protein; Has 15 Blast hits to...   446    8e-125


> AT3G51750.1 | Symbols:  | unknown protein; Has 15 Blast hits 
to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:19196503-19197334 REVERSE 
LENGTH=563
Length=563

 Score =  446 bits (241),  Expect = 8e-125
 Identities = 312/344 (91%), Gaps = 13/344 (4%)
 Strand=Plus/Plus

Query  1    ATGGAAGAAGGCGTTCCAGAAGCAGAGAAGGTCGTGTGTCCaaaagaagtcgtagaaaag  60
            |||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  28   ATGGAAGAAGACGTTCCAGAAGCAGAGAAGCTCATGTGTCCAAAAGAAGTCGTAGAAAAG  87

Query  61   aacaaagataaacaagaactagaagaagaagaagagaaagGAGCTAAAGGTGGGATTTTG  120
            |||||||||||||||| |  |||||||||||| |||||||||||||||||||||||||||
Sbjct  88   AACAAAGATAAACAAG-A--AGAAGAAGAAGACGAGAAAGGAGCTAAAGGTGGGATTTTG  144

Query  121  AACAATCTGATATCCAACTTTATGGAT-GcaacaacaacaacaacaGCAGAGGGAAAATC  179
            ||||||||||||||||| ||||||||| | | |||||||||||   | ||||||||||||
Sbjct  145  AACAATCTGATATCCAATTTTATGGATTGTA-CAACAACAACA---GTAGAGGGAAAATC  200

Query  180  TGGTAAAAACATTCAAAAAT-TAGAATGTGAAGATGAAAATGACAAGGAAAAAGAGAGCT  238
            | || |||||||||| |||| |  | |||||||||||| |||| |||||| |||||||| 
Sbjct  201  TAGTGAAAACATTCAGAAATCTCTA-TGTGAAGATGAAGATGAGAAGGAACAAGAGAGC-  258

Query  239  CATCAAGTGTTGGAGTCTTAGAGAAGATTATTTCTCATCTGCCAGAAGACGCAGCTCCAA  298
            |  ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  259  C--CAAGTGTTGGAATCTTAGAGAAGATTATTTCTCATCTGCCAGAAGACGTAGCTCCAA  316

Query  299  CAACAGAGGAGGCAGCCATTTTGATCCACTCTGCGATTGACTGA  342
            ||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct  317  CAACAGACGAGGCAGCCATTTTGATCCACTCGGCGATTGACTGA  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15985144182


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5