BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg348307 Length=2037 Score E Sequences producing significant alignments: (Bits) Value AT3G52100.1 | Symbols: | RING/FYVE/PHD-type zinc finger family... 2654 0.0 AT3G08020.1 | Symbols: | PHD finger family protein | chr3:2557... 60.2 8e-08 > AT3G52100.1 | Symbols: | RING/FYVE/PHD-type zinc finger family protein | chr3:19319343-19322773 FORWARD LENGTH=2091 Length=2091 Score = 2654 bits (1437), Expect = 0.0 Identities = 1591/1667 (95%), Gaps = 4/1667 (0%) Strand=Plus/Plus Query 373 GTTTCTGTCAAAGAGCTCAATGGAGATGATCATGATCATCACAGTTCAAGCATAACATGT 432 ||||| |||||||| ||||||| ||| |||||||||||||||||| |||||||||||||| Sbjct 427 GTTTCAGTCAAAGACCTCAATGAAGAAGATCATGATCATCACAGTGCAAGCATAACATGT 486 Query 433 CACATGTGCTATTTGGTTGAAGTTGGGAAAAGTGAGAGAGCTAAAATGCTTTCTTGCAAA 492 ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| Sbjct 487 CACATGTGCTATTTGGTTGAAGTTGGGAAGAGTGAGAGAGCCAAGATGCTTTCTTGCAAA 546 Query 493 TCTTGTGGCAAGAAGTATCACAGAAACTGCTTGAAGTCTTGGGCTCAACATAGAGATCTG 552 | |||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||| Sbjct 547 TGTTGTGGGAAGAAGTATCATAGAAACTGCGTGAAGTCTTGGGCCCAACATAGAGATCTT 606 Query 553 TTTAATTGGAGCTCTTGGGCGTGCCCCTCTTGCCGAATCTGTGAGGGCTGCGGGACTTTA 612 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 607 TTTAATTGGAGCTCTTGGGCGTGCCCATCTTGCCGAATCTGTGAGGGCTGCGGGACTTTA 666 Query 613 GGAGATCCAAAGAAGTTTATGTTCTGCAAAAGATGTGATGATGCATATCATTGTGATTGC 672 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 GGGGATCCAAAAAAGTTTATGTTCTGCAAAAGATGTGATGATGCATATCATTGTGATTGC 726 Query 673 CAACAACCTCGGCACAAGAATGTTAGTTCTGGACCCTATCTGTGTCCTAAGCACACCAAA 732 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 727 CAACATCCTCGGCACAAGAATGTTAGTTCTGGACCCTATTTGTGTCCTAAGCACACCAAA 786 Query 733 TGTTACAGCTGTGGGTCTACAGTCCCTGGGAATGGCCAGAGCTTACGGTGGTTTTTGGGG 792 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 787 TGTTACAGTTGTGAGTCTACAGTCCCTGGGAATGGCCAGAGCTTACGGTGGTTTTTGGGG 846 Query 793 CATACTTGTTGTGATGCTTGTGGAAGGTTGTTTGTTAAGGGAAATTATTGTCCTGTATGT 852 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 847 CATACTTGTTGTGATGCTTGTGGAAGGTTGTTTGTTAAGGGGAATTATTGTCCTGTATGT 906 Query 853 TTGAAGGTTTACAGGGACTCAGAAGCAACACCAATGGTGTGTTGTGACTTTTGCCAGCGC 912 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 907 TTGAAGGTTTACAGGGACTCGGAAGCAACGCCAATGGTGTGTTGTGACTTTTGCCAGCGC 966 Query 913 TGGGTTCATTGCCACTGTGATGGAATTAGCGATGAGAAATATATGCAGTTTCAAGTGGAT 972 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 967 TGGGTTCATTGCCAGTGTGATGGAATTAGCGATGAGAAATATATGCAGTTTCAAGTGGAT 1026 Query 973 GGGAATCTTCAATACAAATGTTCTACTTGTCGTGGGGAATGCTACCAGGTCAAGGATCTT 1032 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1027 GGGAATCTTCAATACAAATGTTCTACTTGTCGTGGGGAATCCTACCAGGTCAAGGATCTT 1086 Query 1033 GAGGATGCTGTACAAGAAATTTGGAAGCGAAAAGATATAGCTGATAAAGAGCTAATTGCC 1092 || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1087 GAAGATGCTGTACAAGAAATTTGGAAGCGAAAAGATATGGCTGATAAAGATCTAATTGCT 1146 Query 1093 AGCCTGAAAGCTAGTGCTCGGGTTGTTGGGCAAACTGGTGGTGCCCTTCTTGTGAATCAG 1152 ||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 1147 AGCTTGAAAGCTAGTGCTCGGGTTGTTGGGCAAACTGGTGGTGCCCCTCTTATGAATCAG 1206 Query 1153 CCTGGCTCTGTGGAAAGAAAAGTTTCTGAAAAGGCTATGGTCAATGGTGAAGAAGAGAAG 1212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1207 CCTGGCTCTGTGGAAAGAAAAGTTTCTGAAAAGGCTATGGTCAATGGTGAAGAAGAGAAG 1266 Query 1213 CCATTGAGAGTTCTCAGGATAAAAAGTAGCAGGACTCAAGATTCAGATAGTGAGAAATTT 1272 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1267 CCATTGAGAGTTCTCAGGATAAAAAGTAGCAGGCCTCAAGATTCAGATAGTGAGAAATTT 1326 Query 1273 GGAAAACACGGTACAGAGCTGAACACTGTGAAGGCGAAAAAATTGGTGATAAGTATAGGT 1332 |||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 1327 GGAAAACACGCTACAGAGCTGAGCACTGTGAAGGCGAAAAAGTTGGTGATAAGTATAGGT 1386 Query 1333 CCTCGAAAGACGGGGGTTACAAACTCTACGAGCTGCGATGTATCAAAG-CTTACCTCCAA 1391 ||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1387 CCTCGAAAGACAGGGGTTACAAACTCTACGAGCTGCGATGTATCAAAGACTG-CCTCCAA 1445 Query 1392 ATCCAATGGAAAGCAAGAAAAATTGCAATCAGAGGAAACGTTTTCCCGAGAACAGCATCG 1451 ||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| Sbjct 1446 ATCAAATGGAAAGCAAGAAAAATTGCAAGCAGAGGAAACGTTTTCCCGGGAAGAGCGTCG 1505 Query 1452 CAGCTTGCTGGGGAAGAATAGTGACGAAAAGAGAGGGTCTCGAGGTGAAGTAGCCACTTC 1511 |||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1506 CAGCTTGCTGGGAAAGAATAGTGACGAAAAGAGAGGGTCTCGAGGTGAAGTAACTACTTT 1565 Query 1512 AAAGGCTGAGGGAGGAATCATAGGAAGACACTCAGATGGTAAAGGAGATTTAAATAGTGG 1571 |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1566 AAAGGCTGAGGGCGGATTCATAGGGAGACACTCAGATGGTAAAGGAGATTTAAATAGTGG 1625 Query 1572 CTCGCATGATTCATTGCAGAAAGATTCAAGGAGATTGCTGAAACTT-AGAATaaaaaaaC 1630 |||||||||||||| |||||||||||||||| ||||| ||||| || | ||||||||||| Sbjct 1626 CTCGCATGATTCATCGCAGAAAGATTCAAGGCGATTGTTGAAA-TTGAAAATAAAAAAAC 1684 Query 1631 ATAATCCTGAGAGCCAAGAAGGTGAAGCCCCTAGCATTGTATATGAAAGAGGTAAATCTG 1690 ||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1685 ATAATCCCGAGGGCCAAGAAAGTGAAGCCCCTAGCATTGTATATGAAAGAAGTAAATCTG 1744 Query 1691 GTAAAGGACATAGGTCTAAGAGGAAAAGAGCATCACCTCCAGCTGAAAAGTCAGCGTTCA 1750 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1745 GTAAAGGACATAGGTCAAAGAGGAAAAGAGCATCACCTCCAGCTGAGAAGTCAGCGTTCA 1804 Query 1751 ATGAAGATGAAGATGTATCGCTGTCCCGTGAAGACAGTTTGTTAGACGAAATGCTTGATG 1810 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | Sbjct 1805 ATGAAGATGAAGATGTATCGCTGTCACGAGAAGACAGTTTGTTAGACGAAATGCTTGACG 1864 Query 1811 CTAGTTGGATTCTGAAGAAGTTGGGGAAAGATGCGAAAGGAAAAAAGGTTCAAATACACG 1870 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1865 CTAGTTGGATTCTGAAGAAGTTGGGGAAAGATGCGAAAGGAAAAAAAGTTCAAATACACG 1924 Query 1871 AGGCCTCGGATGATTCATGGGAGAAAGGAGTGGTAAGTGAAGTAGGAGGAGGAGGGGGCA 1930 ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| Sbjct 1925 AGGCCTCGGATGATTCATGGGAGAAAGGAGTTGTAAGTGAAGTAGGAGGAGCTGGAGGCA 1984 Query 1931 CATCGAAGTTGATGGTGACGCTAGAGAATGGAAAAGTGAAGACGGTCGAGCTCGGAAAGC 1990 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1985 CCTCGAAGTTGATGGTGACGCTAGAGAATGGAAAAGTGAAGACGGTCGAGCTCGGGAAGC 2044 Query 1991 AAGGGGTTCGATTTGTTCCTCAGAAGCAAAAGAGAACGAGAACGTGA 2037 ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2045 AAGGGGTTCGATTTGTTCCTCAGAAACAAAAGAGAACGAGAACGTGA 2091 Score = 549 bits (297), Expect = 4e-155 Identities = 355/383 (93%), Gaps = 4/383 (1%) Strand=Plus/Plus Query 1 ATGGCCTTTCACGTAGCTTGTCCAATTACATGCCGGAAAATTTGCTTCTGCGTTTTGGGG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCCTTTCACGTAGCTTGTCCAATTACATGCCGGAAAATTTGCTTCTGCGTTTTGGGG 60 Query 61 TTTCCTCGGAATCTTCATGGTAAAGAAGTCAAGGATGTGTTTCTCAACCG-GATCCATTC 119 ||| ||||||||||||||||||| |||||||||||||||| |||||| | ||||||||| Sbjct 61 TTTTCTCGGAATCTTCATGGTAATGAAGTCAAGGATGTGTATCTCAAA-GAGATCCATTC 119 Query 120 TCTTGAAGAGTGCTTGCTAAATCCCTGGAATGCTGAGGTTTCCAAGGACGGTACCGTTCA 179 |||| | |||| | ||| ||| |||||| ||||||||||||||||||||||||||||||| Sbjct 120 TCTTCAGGAGTTCGTGCGAAACCCCTGGGATGCTGAGGTTTCCAAGGACGGTACCGTTCA 179 Query 180 GATCCATGTGCCTAAGCTCGCTGTTTTCGATACGGGTCCTCGCATTGCGGCTAGAAATGT 239 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 180 GATCCATGTGCCTAAGCTTGCTGTTTTCGATACTGGTCCTCGCATTGCGGCTAGAAATGT 239 Query 240 TGGTATTGGGAGTGATTCTGCGATGGAGGTTGTTGCTGCATCATCGAATTTGGTACCAGC 299 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TGGTGTTGGGAGTGATTCGGCGATGGAGGTTGTTGCTGCATCATCGAATTTGGTACCAGC 299 Query 300 TAAACGGACGGTGGTGTTGCAGAAGAAGG-TAGTGGAAGATTATGCTGTGGATGATGGTT 358 |||||| || |||||||||||||||||| | ||||||| |||||||| | ||||| ||| Sbjct 300 TAAACGCACCTTGGTGTTGCAGAAGAAGGCT-GTGGAAGTTTATGCTGCGAATGATTGTT 358 Query 359 CTGGCGACTTAGAGGTTTCTGTC 381 ||||||||||||||| |||||| Sbjct 359 CTGGCGACTTAGAGGAATCTGTC 381 > AT3G08020.1 | Symbols: | PHD finger family protein | chr3:2557437-2561802 REVERSE LENGTH=2924 Length=2924 Score = 60.2 bits (32), Expect = 8e-08 Identities = 32/32 (100%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 1 ATGGCCTTTCACGTAGCTTGTCCAATTACATG 32 |||||||||||||||||||||||||||||||| Sbjct 269 ATGGCCTTTCACGTAGCTTGTCCAATTACATG 300 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100953295995 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5