BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348307
Length=2037
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52100.1 | Symbols: | RING/FYVE/PHD-type zinc finger family... 2654 0.0
AT3G08020.1 | Symbols: | PHD finger family protein | chr3:2557... 60.2 8e-08
> AT3G52100.1 | Symbols: | RING/FYVE/PHD-type zinc finger family
protein | chr3:19319343-19322773 FORWARD LENGTH=2091
Length=2091
Score = 2654 bits (1437), Expect = 0.0
Identities = 1591/1667 (95%), Gaps = 4/1667 (0%)
Strand=Plus/Plus
Query 373 GTTTCTGTCAAAGAGCTCAATGGAGATGATCATGATCATCACAGTTCAAGCATAACATGT 432
||||| |||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||
Sbjct 427 GTTTCAGTCAAAGACCTCAATGAAGAAGATCATGATCATCACAGTGCAAGCATAACATGT 486
Query 433 CACATGTGCTATTTGGTTGAAGTTGGGAAAAGTGAGAGAGCTAAAATGCTTTCTTGCAAA 492
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 487 CACATGTGCTATTTGGTTGAAGTTGGGAAGAGTGAGAGAGCCAAGATGCTTTCTTGCAAA 546
Query 493 TCTTGTGGCAAGAAGTATCACAGAAACTGCTTGAAGTCTTGGGCTCAACATAGAGATCTG 552
| |||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||
Sbjct 547 TGTTGTGGGAAGAAGTATCATAGAAACTGCGTGAAGTCTTGGGCCCAACATAGAGATCTT 606
Query 553 TTTAATTGGAGCTCTTGGGCGTGCCCCTCTTGCCGAATCTGTGAGGGCTGCGGGACTTTA 612
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 607 TTTAATTGGAGCTCTTGGGCGTGCCCATCTTGCCGAATCTGTGAGGGCTGCGGGACTTTA 666
Query 613 GGAGATCCAAAGAAGTTTATGTTCTGCAAAAGATGTGATGATGCATATCATTGTGATTGC 672
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GGGGATCCAAAAAAGTTTATGTTCTGCAAAAGATGTGATGATGCATATCATTGTGATTGC 726
Query 673 CAACAACCTCGGCACAAGAATGTTAGTTCTGGACCCTATCTGTGTCCTAAGCACACCAAA 732
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 727 CAACATCCTCGGCACAAGAATGTTAGTTCTGGACCCTATTTGTGTCCTAAGCACACCAAA 786
Query 733 TGTTACAGCTGTGGGTCTACAGTCCCTGGGAATGGCCAGAGCTTACGGTGGTTTTTGGGG 792
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TGTTACAGTTGTGAGTCTACAGTCCCTGGGAATGGCCAGAGCTTACGGTGGTTTTTGGGG 846
Query 793 CATACTTGTTGTGATGCTTGTGGAAGGTTGTTTGTTAAGGGAAATTATTGTCCTGTATGT 852
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 847 CATACTTGTTGTGATGCTTGTGGAAGGTTGTTTGTTAAGGGGAATTATTGTCCTGTATGT 906
Query 853 TTGAAGGTTTACAGGGACTCAGAAGCAACACCAATGGTGTGTTGTGACTTTTGCCAGCGC 912
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 907 TTGAAGGTTTACAGGGACTCGGAAGCAACGCCAATGGTGTGTTGTGACTTTTGCCAGCGC 966
Query 913 TGGGTTCATTGCCACTGTGATGGAATTAGCGATGAGAAATATATGCAGTTTCAAGTGGAT 972
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TGGGTTCATTGCCAGTGTGATGGAATTAGCGATGAGAAATATATGCAGTTTCAAGTGGAT 1026
Query 973 GGGAATCTTCAATACAAATGTTCTACTTGTCGTGGGGAATGCTACCAGGTCAAGGATCTT 1032
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1027 GGGAATCTTCAATACAAATGTTCTACTTGTCGTGGGGAATCCTACCAGGTCAAGGATCTT 1086
Query 1033 GAGGATGCTGTACAAGAAATTTGGAAGCGAAAAGATATAGCTGATAAAGAGCTAATTGCC 1092
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1087 GAAGATGCTGTACAAGAAATTTGGAAGCGAAAAGATATGGCTGATAAAGATCTAATTGCT 1146
Query 1093 AGCCTGAAAGCTAGTGCTCGGGTTGTTGGGCAAACTGGTGGTGCCCTTCTTGTGAATCAG 1152
||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1147 AGCTTGAAAGCTAGTGCTCGGGTTGTTGGGCAAACTGGTGGTGCCCCTCTTATGAATCAG 1206
Query 1153 CCTGGCTCTGTGGAAAGAAAAGTTTCTGAAAAGGCTATGGTCAATGGTGAAGAAGAGAAG 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 CCTGGCTCTGTGGAAAGAAAAGTTTCTGAAAAGGCTATGGTCAATGGTGAAGAAGAGAAG 1266
Query 1213 CCATTGAGAGTTCTCAGGATAAAAAGTAGCAGGACTCAAGATTCAGATAGTGAGAAATTT 1272
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1267 CCATTGAGAGTTCTCAGGATAAAAAGTAGCAGGCCTCAAGATTCAGATAGTGAGAAATTT 1326
Query 1273 GGAAAACACGGTACAGAGCTGAACACTGTGAAGGCGAAAAAATTGGTGATAAGTATAGGT 1332
|||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1327 GGAAAACACGCTACAGAGCTGAGCACTGTGAAGGCGAAAAAGTTGGTGATAAGTATAGGT 1386
Query 1333 CCTCGAAAGACGGGGGTTACAAACTCTACGAGCTGCGATGTATCAAAG-CTTACCTCCAA 1391
||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1387 CCTCGAAAGACAGGGGTTACAAACTCTACGAGCTGCGATGTATCAAAGACTG-CCTCCAA 1445
Query 1392 ATCCAATGGAAAGCAAGAAAAATTGCAATCAGAGGAAACGTTTTCCCGAGAACAGCATCG 1451
||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||
Sbjct 1446 ATCAAATGGAAAGCAAGAAAAATTGCAAGCAGAGGAAACGTTTTCCCGGGAAGAGCGTCG 1505
Query 1452 CAGCTTGCTGGGGAAGAATAGTGACGAAAAGAGAGGGTCTCGAGGTGAAGTAGCCACTTC 1511
|||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1506 CAGCTTGCTGGGAAAGAATAGTGACGAAAAGAGAGGGTCTCGAGGTGAAGTAACTACTTT 1565
Query 1512 AAAGGCTGAGGGAGGAATCATAGGAAGACACTCAGATGGTAAAGGAGATTTAAATAGTGG 1571
|||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1566 AAAGGCTGAGGGCGGATTCATAGGGAGACACTCAGATGGTAAAGGAGATTTAAATAGTGG 1625
Query 1572 CTCGCATGATTCATTGCAGAAAGATTCAAGGAGATTGCTGAAACTT-AGAATaaaaaaaC 1630
|||||||||||||| |||||||||||||||| ||||| ||||| || | |||||||||||
Sbjct 1626 CTCGCATGATTCATCGCAGAAAGATTCAAGGCGATTGTTGAAA-TTGAAAATAAAAAAAC 1684
Query 1631 ATAATCCTGAGAGCCAAGAAGGTGAAGCCCCTAGCATTGTATATGAAAGAGGTAAATCTG 1690
||||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1685 ATAATCCCGAGGGCCAAGAAAGTGAAGCCCCTAGCATTGTATATGAAAGAAGTAAATCTG 1744
Query 1691 GTAAAGGACATAGGTCTAAGAGGAAAAGAGCATCACCTCCAGCTGAAAAGTCAGCGTTCA 1750
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1745 GTAAAGGACATAGGTCAAAGAGGAAAAGAGCATCACCTCCAGCTGAGAAGTCAGCGTTCA 1804
Query 1751 ATGAAGATGAAGATGTATCGCTGTCCCGTGAAGACAGTTTGTTAGACGAAATGCTTGATG 1810
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 1805 ATGAAGATGAAGATGTATCGCTGTCACGAGAAGACAGTTTGTTAGACGAAATGCTTGACG 1864
Query 1811 CTAGTTGGATTCTGAAGAAGTTGGGGAAAGATGCGAAAGGAAAAAAGGTTCAAATACACG 1870
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1865 CTAGTTGGATTCTGAAGAAGTTGGGGAAAGATGCGAAAGGAAAAAAAGTTCAAATACACG 1924
Query 1871 AGGCCTCGGATGATTCATGGGAGAAAGGAGTGGTAAGTGAAGTAGGAGGAGGAGGGGGCA 1930
||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 1925 AGGCCTCGGATGATTCATGGGAGAAAGGAGTTGTAAGTGAAGTAGGAGGAGCTGGAGGCA 1984
Query 1931 CATCGAAGTTGATGGTGACGCTAGAGAATGGAAAAGTGAAGACGGTCGAGCTCGGAAAGC 1990
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1985 CCTCGAAGTTGATGGTGACGCTAGAGAATGGAAAAGTGAAGACGGTCGAGCTCGGGAAGC 2044
Query 1991 AAGGGGTTCGATTTGTTCCTCAGAAGCAAAAGAGAACGAGAACGTGA 2037
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2045 AAGGGGTTCGATTTGTTCCTCAGAAACAAAAGAGAACGAGAACGTGA 2091
Score = 549 bits (297), Expect = 4e-155
Identities = 355/383 (93%), Gaps = 4/383 (1%)
Strand=Plus/Plus
Query 1 ATGGCCTTTCACGTAGCTTGTCCAATTACATGCCGGAAAATTTGCTTCTGCGTTTTGGGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCTTTCACGTAGCTTGTCCAATTACATGCCGGAAAATTTGCTTCTGCGTTTTGGGG 60
Query 61 TTTCCTCGGAATCTTCATGGTAAAGAAGTCAAGGATGTGTTTCTCAACCG-GATCCATTC 119
||| ||||||||||||||||||| |||||||||||||||| |||||| | |||||||||
Sbjct 61 TTTTCTCGGAATCTTCATGGTAATGAAGTCAAGGATGTGTATCTCAAA-GAGATCCATTC 119
Query 120 TCTTGAAGAGTGCTTGCTAAATCCCTGGAATGCTGAGGTTTCCAAGGACGGTACCGTTCA 179
|||| | |||| | ||| ||| |||||| |||||||||||||||||||||||||||||||
Sbjct 120 TCTTCAGGAGTTCGTGCGAAACCCCTGGGATGCTGAGGTTTCCAAGGACGGTACCGTTCA 179
Query 180 GATCCATGTGCCTAAGCTCGCTGTTTTCGATACGGGTCCTCGCATTGCGGCTAGAAATGT 239
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 GATCCATGTGCCTAAGCTTGCTGTTTTCGATACTGGTCCTCGCATTGCGGCTAGAAATGT 239
Query 240 TGGTATTGGGAGTGATTCTGCGATGGAGGTTGTTGCTGCATCATCGAATTTGGTACCAGC 299
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGTGTTGGGAGTGATTCGGCGATGGAGGTTGTTGCTGCATCATCGAATTTGGTACCAGC 299
Query 300 TAAACGGACGGTGGTGTTGCAGAAGAAGG-TAGTGGAAGATTATGCTGTGGATGATGGTT 358
|||||| || |||||||||||||||||| | ||||||| |||||||| | ||||| |||
Sbjct 300 TAAACGCACCTTGGTGTTGCAGAAGAAGGCT-GTGGAAGTTTATGCTGCGAATGATTGTT 358
Query 359 CTGGCGACTTAGAGGTTTCTGTC 381
||||||||||||||| ||||||
Sbjct 359 CTGGCGACTTAGAGGAATCTGTC 381
> AT3G08020.1 | Symbols: | PHD finger family protein | chr3:2557437-2561802
REVERSE LENGTH=2924
Length=2924
Score = 60.2 bits (32), Expect = 8e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1 ATGGCCTTTCACGTAGCTTGTCCAATTACATG 32
||||||||||||||||||||||||||||||||
Sbjct 269 ATGGCCTTTCACGTAGCTTGTCCAATTACATG 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100953295995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5