BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348313
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1122 0.0
AT3G52155.1 | Symbols: | Phosphoglycerate mutase family protei... 1068 0.0
> AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342024-19343466 FORWARD LENGTH=1188
Length=1188
Score = 1122 bits (607), Expect = 0.0
Identities = 689/728 (95%), Gaps = 7/728 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACTTTCCTGACAAATGTTGTTTCAATCAAACCTACAATCTTCTCATTCCAGTCC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 ATGGCGACTTTCCTAACAAATGTTGTTTCAATCAAACCTACAATCTTCTCATTCCAGTCC 110
Query 61 GAATCCTTCACCCCTTTGCAGACGA-GGGCCAATGTATTCTCCTCGAAACCCTTTCCTTC 119
||||||||||| |||||||| || | ||| ||||||||||||||||||||||||||||||
Sbjct 111 GAATCCTTCACTCCTTTGCATAC-ACGGGTCAATGTATTCTCCTCGAAACCCTTTCCTTC 169
Query 120 TCTCGCCGGAACCTTCTCCCGGAGCGCTAGAACGAGATTCATTCCTTATGCTGTAACGGA 179
|||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 170 TCTCGCTGGAACTTTCTCCCGGAGCTCTAGAACGAGATTCATTCCTTATGCTGTAACGGA 229
Query 180 GACGGAAGAAAAACCCGCTGCTTTGGACCCTAGTTCCGAAGCCGCCAGGCGTGTCTATAT 239
|||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 230 GACGGAAGAAAAACCCGCCGCTTTGGACCCTAGTTCAGAAGCTGCCAGGCGTGTGTATAT 289
Query 240 CGGTAACATACCAAGGACAGTGACCAATGAGCAGCTCACTAAACTTGTTGAAGAACACGG 299
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CGGTAACATACCCAGGACGGTGACCAATGAGCAGCTCACTAAACTTGTTGAAGAACACGG 349
Query 300 TGCTGTTGAAAAAGTTCAGGTGATGTATGATAAGTATTCAGGACGAAGCCGTCGATTTGG 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 350 TGCTGTTGAAAAAGTTCAGGTGATGTATGATAAGTATTCAGGAAGAAGCCGTCGATTTGG 409
Query 360 GTTTGCTACTATGAAATCAGTTGAAGATGCGAATGCTGTGGTTGAGAAATTGAATGGCAA 419
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 410 GTTTGCTACAATGAAATCAGTTGAAGATGCTAATGCTGTGGTTGAGAAATTGAATGGCAA 469
Query 420 TACCGTTGAAGGGCGTGAGATAAAGGTTAACATTACAGAGAAACCTATAGCATCATCATC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 470 TACCGTTGAAGGGCGTGAGATAAAGGTTAACATTACAGAGAAACCTATAGCATCATCA-C 528
Query 480 TCCTGATTTATCACTGCTTCAGTCTGAAGATTCTGCATTTGTAGACAGCCCTTACAAAGT 539
| |||||||||| | ||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 529 -C-TGATTTATCAGTTCTTCAGTCTGAGGATTCAGCATTTGTAGATAGCCCTTACAAAGT 586
Query 540 GTATGTAGGAAATCTAGCAAAGACTGTTACAAAGGAGATGCTTGAGAATTTGTTTTCTGA 599
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 587 GTATGTTGGGAATCTAGCAAAGACTGTTACAAAAGAGATGCTTGAGAATTTGTTTTCTGA 646
Query 600 GAAAGGGAAAGTTGTAAGTGCCAAGGTCTCAAGAGTACCTGGAACTTCGAAATCCACCGG 659
|||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 647 GAAAGGGAAAGTAGTAAGTGCTAAGGTTTCAAGAGTACCTGGAACTTCCAAATCCACCGG 706
Query 660 GTTTGGATTCGTAACTTTTTCTTCAGAAGAAGATGTGGAAGCTGCCATT-TTGGCTCTTA 718
|||||||||||| || |||||||| ||||||||||||||||| |||||| ||| ||||||
Sbjct 707 GTTTGGATTCGTTACGTTTTCTTCTGAAGAAGATGTGGAAGCAGCCATTGTTG-CTCTTA 765
Query 719 ACAATTCG 726
||||||||
Sbjct 766 ACAATTCG 773
> AT3G52155.1 | Symbols: | Phosphoglycerate mutase family protein
| chr3:19343695-19344849 FORWARD LENGTH=829
Length=829
Score = 1068 bits (578), Expect = 0.0
Identities = 636/665 (96%), Gaps = 0/665 (0%)
Strand=Plus/Plus
Query 740 AGCCAGAGATGCTTAGCTTGCAGTGTCTTCCTCCTTTCTTCATCTCCGTCCCAAATCGGA 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 AGCCAGAGATGCTTAGCTTGCAGTGTCTTCCTCCTTTCTTCATCTCCGTCCCAAATCGGA 97
Query 800 GCACCAACTCTTGCTCAACGGCTCCAATTCGTGCGACCAGTGACTTCGCTGCTTCTCCGT 859
||||||| |||||||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct 98 GCACCAATTCTTGCTCCACGGCTCCACTTCGTGCGGTCAGTGACTTCGCTGCTTCTCCGT 157
Query 860 CGTCCCCAATCTCTCGCCGTCTTATCCTTCTCCGTCACGCTCACAGTTCCTGGGATGATA 919
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 CGACCTCAATCTCTCGCCGTCTTATCCTTCTCCGTCACGCTCACAGTTCCTGGGATGATC 217
Query 920 TTTCCCTCAGAGACCATGATCGTCCTCTAAGTAAAACCGGACAAGCCGATGCTGCCAAAG 979
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 218 TTTCCCTCAGAGACCATGATCGTCCTCTAAGTAAAACCGGAGAAGCAGATGCTGCCAAAG 277
Query 980 TAGCTCAAATCCTCTCCTCACTTGGTTGGCTTCCCCAACTCATTCTCTCAAGTGACGCCA 1039
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 278 TAGCTCAAATCCTCTCCTCACTCGGTTGGCTTCCCCAACTTATTCTCTCAAGCGACGCCA 337
Query 1040 CTCGCACTAGAGAGACACTGAGGTCAATGCAAGCGCAAGTAGATGAGTTTATGGAGGCAA 1099
|||| |||||||||||||||| ||| ||||| || |||||||||| ||||||||||||||
Sbjct 338 CTCGGACTAGAGAGACACTGAAGTCGATGCAGGCTCAAGTAGATGGGTTTATGGAGGCAA 397
Query 1100 ATGTACATTTCATTCCTAGCTTTTACTCCATTGCTGCTATGGATGGCCAAACCGCCGAGC 1159
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 398 ATGTACATTTCATTCCTAGCTTTTACTCCATTGCTGCTATGGATGGCCAAACAGCCGAGC 457
Query 1160 ATCTTCAAAACATTATCTCCAAATATTCAACCCCTGATATCTCCACTATCATGTGTATGG 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 ATCTTCAAAACATTATCTCCAAATATTCAACCCCTGATATCTCCACTATCATGTGTATGG 517
Query 1220 GTCATAATAAGGGTTGGGAAGAAGCAGCCTCCATGCTCTCTGGGGCTTCTGTTAAGTTGA 1279
| |||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 518 GGCATAATAAGGGTTGGGAAGAAGCAGCTTCCATGCTCTCTGGAGCTTCTATTAAGTTGA 577
Query 1280 AAACATGCAATGCTGCTTTGCTTCAGGCTTTTGGCAACTCCTGGGAAGAAGCTTTTGCGC 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 AAACATGCAATGCTGCTTTGCTTCAGGCTTTTGGCAACTCCTGGGAAGAAGCTTTTGCGC 637
Query 1340 TCTCTGGCCCTGGCGGATGGAAACTTGAGGGTCTAGTGGCTCCAGATAGTAGCATCTGTG 1399
| || || ||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 638 TGTCCGGGCCTGGTGGATGGAAACTTGAGGGTCTAGTGGCTCCAGATAGTAGCATCTTTG 697
Query 1400 TGTAA 1404
|||||
Sbjct 698 TGTAA 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5