BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348323
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52270.1 | Symbols: | Transcription initiation factor IIF, ... 1086 0.0
> AT3G52270.1 | Symbols: | Transcription initiation factor IIF,
beta subunit | chr3:19387180-19388944 REVERSE LENGTH=852
Length=852
Score = 1086 bits (588), Expect = 0.0
Identities = 730/796 (92%), Gaps = 20/796 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGATGGT-AAGGTAGAATTTAAGGTAAAGAAGAATGAGAATGAAGCATTGGAAAC 59
||||||||| || ||||| ||| | ||||||| |||||||||||||||||| ||||||||
Sbjct 58 ATGGAAGAT-GTAAAGGTGGAAATGAAGGTAAGGAAGAATGAGAATGAAGCGTTGGAAAC 116
Query 60 GGGATTAGCAGATAGATCGATGTTGCTAATGAAAGCTCCATCTCTCGTCGCGAGTTCTCT 119
||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 117 GGGTTTGGCAGAGAGATCGATGTTGCTGATGAAAGCTCCATCTCTCGTCGCGAGTTCTCT 176
Query 120 CC-A-GTC--TC--TTCCT-----T---T----TCCTGACGATCCGTACCGTCCTGACGC 161
|| | || || ||||| | | |||||||||||||||||||||||||||
Sbjct 177 CCAATCTCATTCTTTTCCTGACGATCCGTACCGTCCTGACGATCCGTACCGTCCTGACGC 236
Query 162 TAAAGTCATCCTTAACGTCGATCTTCTGGCTCCCGAGGACGAAGAGACCAAATTCGTAAT 221
||||||||||| |||||||| |||||||| ||||||||||| |||| ||||||||||
Sbjct 237 CAAAGTCATCCTCGGCGTCGATCCTCTGGCTCACGAGGACGAAGGGACCCAATTCGTAAT 296
Query 222 GGAATTAGCTCGAGCTGAATCTGGAAACATGCCGAGGCGTTACACCTTAGATATGTCTAA 281
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 297 GGAATTAGCTCGAGCTGACTCTGGAAACATGCCGAGGCGTTACACTTTGGATATGTCTAA 356
Query 282 AGATTTCATCCCCATGAATGTTTTCTGTGAATCTTCAGATGGAAAGATGTCAGTAGAAGG 341
|||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 357 AGATTTTATTCCTATGAATGTTTTCTGTGAGTCTTCAGATGGAAAGATGTCAGTAGAAGG 416
Query 342 GAAGATTAAGAACAAATTTGACATGAGGCCTCATAACGAGAACATCGAGAGCTATGGGAG 401
|||||| |||||||||||||| ||||||||||||||||| || || || |||||||||||
Sbjct 417 GAAGATAAAGAACAAATTTGATATGAGGCCTCATAACGAAAATATTGAAAGCTATGGGAG 476
Query 402 ATTGTGCCGTGAAAGAACAAACAAGTATATGGGCAAAAACAGACAGATCCAGGTCATTGA 461
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 477 ATTGTGCCGTGAAAGAACAAACAAGTATATGGGCAAAAATAGACAGATCCAGGTCATTGA 536
Query 462 TAATGCCAGAGGAATGCATATGAGGCCAATGCCAGGAATGATAATCCCAACCGCGGCTCC 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TAATGCCAGAGGAATGCATATGAGGCCAATGCCAGGAATGATAATCCCAACCGCGGCTCC 596
Query 522 TGAAAAGAAGAAATTGACAAATAGGACATCAGAAATGAAGAGAACAAGAAGGGACCGTAG 581
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 597 GGAAAAGAAAAAATTGACGAACAGGACATCAGAAATGAAGAGAACAAGAAGGGACCGTAG 656
Query 582 AGAGATGGAAGAGGTCATGTTTAATCTCTTTGAAAGACAGTCAAATTGGACTCTGAGGCT 641
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 657 AGAGATGGAGGAGGTGATGTTTAATCTCTTTGAAAGACAATCAAATTGGACTCTGAGGCT 716
Query 642 GCTCATTCAGGAAACTGATCAGCCAGAGCAATTCCTGAAAGACTTGCTGAGAGATCTTTG 701
|||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 717 GCTCATTCAGGAAACTGACCAGCCAGAGCAATTCCTGAAAGACTTGTTGAAAGATCTATG 776
Query 702 CATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAGTACAAGAA 761
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 777 CATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAATATAAGAA 836
Query 762 AGCCACACAGGAATAG 777
|||||| |||||||||
Sbjct 837 AGCCACTCAGGAATAG 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5