BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg348323 Length=777 Score E Sequences producing significant alignments: (Bits) Value AT3G52270.1 | Symbols: | Transcription initiation factor IIF, ... 1086 0.0 > AT3G52270.1 | Symbols: | Transcription initiation factor IIF, beta subunit | chr3:19387180-19388944 REVERSE LENGTH=852 Length=852 Score = 1086 bits (588), Expect = 0.0 Identities = 730/796 (92%), Gaps = 20/796 (3%) Strand=Plus/Plus Query 1 ATGGAAGATGGT-AAGGTAGAATTTAAGGTAAAGAAGAATGAGAATGAAGCATTGGAAAC 59 ||||||||| || ||||| ||| | ||||||| |||||||||||||||||| |||||||| Sbjct 58 ATGGAAGAT-GTAAAGGTGGAAATGAAGGTAAGGAAGAATGAGAATGAAGCGTTGGAAAC 116 Query 60 GGGATTAGCAGATAGATCGATGTTGCTAATGAAAGCTCCATCTCTCGTCGCGAGTTCTCT 119 ||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 117 GGGTTTGGCAGAGAGATCGATGTTGCTGATGAAAGCTCCATCTCTCGTCGCGAGTTCTCT 176 Query 120 CC-A-GTC--TC--TTCCT-----T---T----TCCTGACGATCCGTACCGTCCTGACGC 161 || | || || ||||| | | ||||||||||||||||||||||||||| Sbjct 177 CCAATCTCATTCTTTTCCTGACGATCCGTACCGTCCTGACGATCCGTACCGTCCTGACGC 236 Query 162 TAAAGTCATCCTTAACGTCGATCTTCTGGCTCCCGAGGACGAAGAGACCAAATTCGTAAT 221 ||||||||||| |||||||| |||||||| ||||||||||| |||| |||||||||| Sbjct 237 CAAAGTCATCCTCGGCGTCGATCCTCTGGCTCACGAGGACGAAGGGACCCAATTCGTAAT 296 Query 222 GGAATTAGCTCGAGCTGAATCTGGAAACATGCCGAGGCGTTACACCTTAGATATGTCTAA 281 |||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| Sbjct 297 GGAATTAGCTCGAGCTGACTCTGGAAACATGCCGAGGCGTTACACTTTGGATATGTCTAA 356 Query 282 AGATTTCATCCCCATGAATGTTTTCTGTGAATCTTCAGATGGAAAGATGTCAGTAGAAGG 341 |||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 357 AGATTTTATTCCTATGAATGTTTTCTGTGAGTCTTCAGATGGAAAGATGTCAGTAGAAGG 416 Query 342 GAAGATTAAGAACAAATTTGACATGAGGCCTCATAACGAGAACATCGAGAGCTATGGGAG 401 |||||| |||||||||||||| ||||||||||||||||| || || || ||||||||||| Sbjct 417 GAAGATAAAGAACAAATTTGATATGAGGCCTCATAACGAAAATATTGAAAGCTATGGGAG 476 Query 402 ATTGTGCCGTGAAAGAACAAACAAGTATATGGGCAAAAACAGACAGATCCAGGTCATTGA 461 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 477 ATTGTGCCGTGAAAGAACAAACAAGTATATGGGCAAAAATAGACAGATCCAGGTCATTGA 536 Query 462 TAATGCCAGAGGAATGCATATGAGGCCAATGCCAGGAATGATAATCCCAACCGCGGCTCC 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TAATGCCAGAGGAATGCATATGAGGCCAATGCCAGGAATGATAATCCCAACCGCGGCTCC 596 Query 522 TGAAAAGAAGAAATTGACAAATAGGACATCAGAAATGAAGAGAACAAGAAGGGACCGTAG 581 |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 597 GGAAAAGAAAAAATTGACGAACAGGACATCAGAAATGAAGAGAACAAGAAGGGACCGTAG 656 Query 582 AGAGATGGAAGAGGTCATGTTTAATCTCTTTGAAAGACAGTCAAATTGGACTCTGAGGCT 641 ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 657 AGAGATGGAGGAGGTGATGTTTAATCTCTTTGAAAGACAATCAAATTGGACTCTGAGGCT 716 Query 642 GCTCATTCAGGAAACTGATCAGCCAGAGCAATTCCTGAAAGACTTGCTGAGAGATCTTTG 701 |||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| || Sbjct 717 GCTCATTCAGGAAACTGACCAGCCAGAGCAATTCCTGAAAGACTTGTTGAAAGATCTATG 776 Query 702 CATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAGTACAAGAA 761 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 777 CATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAATATAAGAA 836 Query 762 AGCCACACAGGAATAG 777 |||||| ||||||||| Sbjct 837 AGCCACTCAGGAATAG 852 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37776078544 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5