BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348388
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52970.2 | Symbols: CYP76G1 | cytochrome P450, family 76, su... 1587 0.0
> AT3G52970.2 | Symbols: CYP76G1 | cytochrome P450, family 76,
subfamily G, polypeptide 1 | chr3:19641306-19643282 REVERSE
LENGTH=1710
Length=1710
Score = 1587 bits (859), Expect = 0.0
Identities = 980/1039 (94%), Gaps = 6/1039 (1%)
Strand=Plus/Plus
Query 512 GTACAAAAACAATCGACGTGGGGAGATATTTCTTCTTGATGGCGTTTAATCTCATAGGAA 571
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 577 GTACAAAAACAATCGATGTGGGGAGATATTTCTTCTTGATGGCATTTAATCTCATAGGAA 636
Query 572 ACCTCATGTTCTCGAGAGATTTGCTCGATCCCGATTCAAAAAGAGGCTCCGAATTCTTCT 631
||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |
Sbjct 637 ACCTCATGTTCTCGAGAGATTTGCTTGATCCTGATTCAAAAAGAGGATCCGAATTCTTTT 696
Query 632 ACCACACCGGAAAAGTGATGGAGTTCGCCGGGAAACCCAACGTTGCCGATTTCTTCCCTT 691
|||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 697 ACCACACCGGGAAAGTGATGGAGTTCGCCGGAAAACCAAACGTTGCCGATTTCTTCCCGT 756
Query 692 TGCTAAGGTTTCTTGACCCTCAAGGAATCAGAAGAAAAACGCAGTTCCACGTGGAAAAAG 751
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 757 TGCTAAGGTTTCTTGACCCTCAAGGAATCAGGAGAAAAACGCAATTCCACGTGGAAAAAG 816
Query 752 CGTTTGAGATCGCCGGAGAGTTCATCAGAGAACGAACGGAAGTTAGGGAGAAAGAAAAGA 811
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 817 CGTTTGAGATCGCCGGAGAGTTCATCAGAGAACGAACGGAGGTTAGGGAGAGAGAAAAGA 876
Query 812 GCGACGAGAAGACGAAAGATTACTTGGATGTTCTTTTGGAGTTTCGTGGTGGCGATGGAG 871
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 877 GCGACGAGAAGACGAAAGATTACTTAGATGTTCTTTTGGAGTTTCGTGGTGGCGATGGAG 936
Query 872 TCGACGAAGAACCTTCTAGCTTCTCATCAAGAGATATCAACGTTATTGTTTTTGAAATGT 931
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 937 TCGACGAAGAACCTTCTAGCTTCTCATCAAGAGATATCAACGTTATTGTTTTCGAAATGT 996
Query 932 TTACGGCTGGAACGGATACAACAACGAGCACGTTGGAATGGGCACTAGCGGAGCTTCTAC 991
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 997 TTACGGCTGGAACGGATACGACAACGAGCACGTTGGAGTGGGCACTAGCGGAGCTTCTAC 1056
Query 992 ACAATCCAAGAAC-CTTAACCAAACTCCAAACCGAACTCCGAACTTATTTCAAGTCCACA 1050
|||| |||||||| || | |||||||||||||||||||||| || || ||||||||| |
Sbjct 1057 ACAACCCAAGAACACTGA-CCAAACTCCAAACCGAACTCCGGACCTACTTCAAGTCCTCG 1115
Query 1051 AACCAAAAGCTCCAAGAAGAAGACCTTCCAAACCTTCCCTATCTCTCGGCGGTTATCATG 1110
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 1116 AACCAAAAGCTCCAAGAAGAAGACCTACCAAACCTTCCCTATCTCTCAGCTGTTATCATG 1175
Query 1111 GAAACCTTAAGGCTGCACCCACCTCTGCCTTTCCTAGTCCCACACAAAGCCATGTCCACG 1170
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1176 GAAACCTTAAGGCTACACCCACCTCTGCCTTTCCTCGTCCCACACAAAGCCATGTCAACT 1235
Query 1171 TGCCACATCTTCGACCAATACACAATCCCCAAAGAAACACAAGTCTTGGTCAATGTATGG 1230
|| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1236 TGTCACATCTTCGATCAATACACTATCCCCAAGGAAACACAAGTCTTGGTCAATGTATGG 1295
Query 1231 GCCATAGGGCGCGATCCTGAAACATGGATCGACCCGATAATGTTCAAACCCGAGAGATTT 1290
||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 GCCATCGGACGCGATCCTAAAACATGGATCGACCCGATAATGTTCAAACCCGAGAGATTT 1355
Query 1291 ATATC-GAACCC-GAACGCCCGAGACTTCAAGGGACAGGATTACGAGTTCTTGCCGTTCG 1348
||||| || ||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1356 ATATCCGA-CCCTGA-CGCCCGAGACTTCAAGGGACAAGATTACGAGTTCTTGCCGTTCG 1413
Query 1349 GGTCAGGTCGACGGATGTGTCCAGCTTTACCTTTGGCGTCACGGGTCTTGCCATTGGCCA 1408
|||| |||||| |||||||||||||||| |||||||| |||||||| ||||| |||||||
Sbjct 1414 GGTCGGGTCGAAGGATGTGTCCAGCTTTGCCTTTGGCATCACGGGTTTTGCCGTTGGCCA 1473
Query 1409 TTGGGTCGATGGTGAGATCGTTTGATTGGGCTTTAGCAAATGGGCTTAATGCAGAAGAAA 1468
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1474 TTGGGTCAATGGTGAGATCGTTTGATTGGGCTTTAGAAAATGGGCTTAATGCAGAAGAAA 1533
Query 1469 TGGATATGGGAGAAAGGATCGGTATTACATTGAAAAAGGCTGTTCCTTTGGAAGCGATTC 1528
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1534 TGGATATGGGAGAAAGGATTGGTATAACATTGAAAAAAGCTGTTCCTTTGGAAGCCATTC 1593
Query 1529 CCATTCCTTATCGAGGGAC 1547
| |||||||||||||||||
Sbjct 1594 CAATTCCTTATCGAGGGAC 1612
Score = 728 bits (394), Expect = 0.0
Identities = 474/514 (92%), Gaps = 0/514 (0%)
Strand=Plus/Plus
Query 1 ATGACTAATCAATTAACGAAGAACGAGTTAATCGGATTATTTACATCCATTGCCCTTCTC 60
|||| |||||||||||| ||||||||||||||||||||||||||||| |||||| | |||
Sbjct 24 ATGATTAATCAATTAACAAAGAACGAGTTAATCGGATTATTTACATCGATTGCCGTCCTC 83
Query 61 ATATACGTTACATGTCTCTTCCACACCAAACGATCTCGTACGAGACTACCTCCGGGACCA 120
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 84 ATATACGTTACATGTCTCTTCTACACCAAACGATGTCGTACGAGACTACCTCCGGGACCA 143
Query 121 AATCCCTGGCCAGTGATCGGCAACATGTTCCAGCTCGCCGGCTCACCGCCACACGACTCA 180
||||| ||||| ||||| || ||||| ||||||||||| || | ||||||||||||||||
Sbjct 144 AATCCATGGCCGGTGATTGGAAACATTTTCCAGCTCGCTGGTTTACCGCCACACGACTCA 203
Query 181 TTGACTAAACTTTCACGGCGTCACGGGCCAATCATGTCTTTGCGGATCGCGTCAATGCTG 240
|||||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||
Sbjct 204 TTGACTAAACTTTCACGGCGTCACGGGCCAATCATGACTTTACGGATCGGGTCGATGCTG 263
Query 241 ACGGTTGTGATCTCTTCGAGTGAAGTGGCTCGGGAGATTTTCAAGAAGCACGACGCAGTT 300
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct 264 ACGGTTGTGATCTCTTCGAGTGAAGTGGCTCGGGAGATCTTCAAGAAGCATGACGCAGCT 323
Query 301 TTGGCCGGCCGGAAGATCTACGAGGCGATGAAGGGAGGGAAGAGCAGTGACGGGTCTCTT 360
||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| || ||
Sbjct 324 TTGGCTGGCCGGAAGATTTACGAGGCGATGAAAGGAGGGAAGAGTAGTGACGGCTCGCTC 383
Query 361 ATAACTGCTCAGTATGGAGCGTATTGGCGGATGCTGCGGAGGCTATGCACCACTCAGTTC 420
|| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 384 ATCACGGCTCAGTATGGTGCGTATTGGCGGATGCTGCGGAGGCTTTGCACCACTCAGTTC 443
Query 421 TTTGTTACTCGCCGTCTTGATGCCATGAGCGATGTACGCTCTAGGTGTGTCGATCAGATG 480
||||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 444 TTTGTCACGCGCCGTCTTGATGCTATGAGTGATGTACGCTCTAGGTGTGTTGATCAGATG 503
Query 481 CTTCGATTTGTCGAAGAAGGTGGCCAAAACGGTA 514
||||| |||||||| |||||||||||||||||||
Sbjct 504 CTTCGGTTTGTCGAGGAAGGTGGCCAAAACGGTA 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5