BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg348399

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53080.1 | Symbols:  | D-galactoside/L-rhamnose binding SUEL...   106    2e-22


> AT3G53080.1 | Symbols:  | D-galactoside/L-rhamnose binding SUEL 
lectin protein | chr3:19677993-19678741 FORWARD LENGTH=651
Length=651

 Score =  106 bits (57),  Expect = 2e-22
 Identities = 152/196 (78%), Gaps = 14/196 (7%)
 Strand=Plus/Plus

Query  247  GGATATGTTATCGCTGAGATAAAATTCGCCGACTATGGCCAA-CCCACTGGTAAC-TGTG  304
            |||||||||||  |  |||| || ||||| || ||||| ||| ||||||||| || ||||
Sbjct  261  GGATATGTTATTACAAAGATCAATTTCGCTGATTATGG-CAATCCCACTGGT-ACATGTG  318

Query  305  AAAAGAACACGCTTAAACGTGGAAACTGCGGCGCACCCGCTACTTTGAGGCTCGTCAAAA  364
                | ||||  ||| |||||| || ||||| ||||  |||||  ||||| |||||||||
Sbjct  319  ----G-ACAC-TTTAGACGTGGCAATTGCGGTGCACGAGCTACCATGAGGATCGTCAAAA  372

Query  365  AGAATTGTCTTGGAAAAGAAGAA-TGTTGG-TTTCCAGTAACAGACGAGATGTTTGGTCC  422
            ||||||||||||||||||| ||| |||    |||   || || || ||||||||||||||
Sbjct  373  AGAATTGTCTTGGAAAAGA-GAAGTGTCACCTTTTG-GTTACGGATGAGATGTTTGGTCC  430

Query  423  GACCCATTGTAAAGGA  438
            || | | || ||||||
Sbjct  431  GAGCAAGTGCAAAGGA  446



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23610049090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5