BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348401
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53070.1 | Symbols: | Putative membrane lipoprotein | chr3:... 324 6e-88
> AT3G53070.1 | Symbols: | Putative membrane lipoprotein | chr3:19674533-19674942
FORWARD LENGTH=318
Length=318
Score = 324 bits (175), Expect = 6e-88
Identities = 198/209 (95%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 173 GGAGTTCTCTTCCTAAGTTGGGCAATCAGATTCCAGTTTGTCGTCACCAAAACAGGTCTA 232
||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 87 GGACTTCTCTT-CTAAGTTGGGCAATCAGATTCCAGTTTGTCGTCATCAAAACAGGTCTA 145
Query 233 GGGCCCCTGTATTGATGTTTGATTGCAAAGAGAAAGGATATGTTTTCACAAAGATCAATT 292
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 146 GGGCCCCTGTATTGATGTTTGATTGCAAAGAGAAAGGATATGTTTTCTCAAAGATCAATT 205
Query 293 TCGCCGACTATGGCCATGCAAGTGGTGATTGTGGTAACTTTAGACGTGGTAATTGCGGCG 352
||||||||||||||||| |||||||||||||||||||||||||||| || | ||| || |
Sbjct 206 TCGCCGACTATGGCCATTCAAGTGGTGATTGTGGTAACTTTAGACGCGGCACTTGTGGTG 265
Query 353 CACCCGATACCTTGAGGCTCGTCAAAAAG 381
||||||||||||||||||| |||||||||
Sbjct 266 CACCCGATACCTTGAGGCTTGTCAAAAAG 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23911453972
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5