BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg348420

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53250.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   540    4e-153


> AT3G53250.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr3:19742968-19743297 FORWARD LENGTH=330
Length=330

 Score =  540 bits (292),  Expect = 4e-153
 Identities = 313/323 (97%), Gaps = 2/323 (1%)
 Strand=Plus/Plus

Query  46   ATGAAGAGCAAATCCATAGTCCTACCTTGTTGTACATCTTCATGCGAGAGTTGCTGCGAC  105
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAGAGCAAATCCATAGTTCTACCTTGTTGTACATCTTCATGCGAGAGTTGCTGCGAC  60

Query  106  AAGGTTTCTTGGGGGTTCAAGAAGGGAAATGAAGTCA-TACCTAAAGATGTTCCAAGAGG  164
            |||||||||||||| |||||||||| |||||||| || |||||||||||||||| |||||
Sbjct  61   AAGGTTTCTTGGGGATTCAAGAAGGAAAATGAAG-CAATACCTAAAGATGTTCCGAGAGG  119

Query  165  ACATTTGGTAGTGTATGTTGGTGATGATTACAAGAGGTTTGTGATAAAGATGAGTTTGCT  224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  ACATTTGGTAGTGTATGTTGGTGATGATTACAAGAGGTTTGTGATAAAGATGAGTTTGCT  179

Query  225  TACACATCCAATCTTTAAAGCATTGCTTGATCAAGCTCAAGATGCTTATAACTCATCAAG  284
            ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  180  TACTCATCCAATCTTTAAAGCATTGCTTGATCAAGCGCAAGATGCTTATAATTCATCAAG  239

Query  285  ACTATGGATTCCATGTGATGAGAACACTTTCCTCGATGTTGTTCGTTGCAGTGGCGCTCC  344
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  240  ACTATGGATTCCATGTGATGAGAACACTTTTCTCGATGTTGTTCGTTGCAGTGGCGCTCC  299

Query  345  TCAGCATCAGAGAAACTGCATTG  367
            |||||||||||||||||||||||
Sbjct  300  TCAGCATCAGAGAAACTGCATTG  322



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5