BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348439
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53450.1 | Symbols: | Putative lysine decarboxylase family ... 1109 0.0
AT2G37210.2 | Symbols: | lysine decarboxylase family protein |... 477 5e-134
> AT3G53450.1 | Symbols: | Putative lysine decarboxylase family
protein | chr3:19812977-19815430 REVERSE LENGTH=648
Length=648
Score = 1109 bits (600), Expect = 0.0
Identities = 628/642 (98%), Gaps = 0/642 (0%)
Strand=Plus/Plus
Query 10 GTCAATAGTGAAACCATGCAAAAGTCAAAGTTTGGAAGAATCTGTGTGTTCTGTGGAAGC 69
||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 7 GTCAACAATGAAACCATGCAAAAGTCAAAGTTTGGAAGAATCTGTGTGTTTTGTGGAAGC 66
Query 70 AGCCAAGGCAAGAAGAGTAGTTACCAAGATGCTGCTGTGGATCTAGGCAACAAATTGGTT 129
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 67 AGCCAAGGCAAGAAGAGTAGTTACCAAGATGCTGCTGTGGATCTAGGCAACGAATTGGTT 126
Query 130 TTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCA 189
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCG 186
Query 190 CAAGCTGTTCATGATGGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CAAGCTGTTCATGATGGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCT 246
Query 250 AGAGAGTTGACCGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGGTATGCATCAAAGA 309
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 247 AGAGAGTTGACCGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGATATGCATCAAAGA 306
Query 310 AAAGCAGAGATGGCTAGACACTCTGATGCTTTTATTGCTTTACCAGGTGGATATGGAACA 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 AAAGCAGAGATGGCTAGACACTCTGATGCTTTTATTGCTTTACCAGGTGGATATGGAACA 366
Query 370 CTTGAAGAGCTTTTGGAGGTCATAACATGGGCTCAGCTTGGTATACATGACAAACCGGTG 429
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 367 CTTGAAGAGCTTTTGGAGGTCATAACATGGGCTCAGCTTGGAATACATGATAAACCGGTG 426
Query 430 GGTTTGCTCAATGTTGATGGATACTACAACTCTTTGCTCTCTTTCATTGATAAAGCCGTT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GGTTTGCTCAATGTTGATGGATACTACAACTCTTTGCTCTCTTTCATTGATAAAGCCGTT 486
Query 490 GAAGAAGGTTTCATCAGTACGAACGCACGCCAGATCATAATTTCTGCACCTACTGCTAAG 549
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 487 GAAGAAGGCTTCATCAGTACAAACGCACGCCAGATCATAATTTCTGCACCTACTGCCAAG 546
Query 550 GAGCTTGTAAAGAAGTTGGAGGAATATTCGCCTTGCCATGAAAGTGTTGCCACTAAGCTT 609
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 547 GAGCTTGTAAAGAAGCTGGAGGAATATTCGCCTTGCCATGAAAGTGTTGCGACTAAGCTT 606
Query 610 TGTTGGGAGATAGAGCGGATTGGCTACTCTTCTGAAGACTGA 651
|||||||||||||||||||||| |||||||||||||||||||
Sbjct 607 TGTTGGGAGATAGAGCGGATTGACTACTCTTCTGAAGACTGA 648
> AT2G37210.2 | Symbols: | lysine decarboxylase family protein
| chr2:15623991-15626938 REVERSE LENGTH=1086
Length=1086
Score = 477 bits (258), Expect = 5e-134
Identities = 313/340 (92%), Gaps = 2/340 (1%)
Strand=Plus/Plus
Query 17 GTGAAACCATGCAAAAGTCAAAGTTTGGAAGAATCTGTGTGTTCTGTGGAAGCAGCCAAG 76
||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 118 GTGAATCGATGCAAAAGTCAAAGTTCAGAAGAATCTGTGTCTTCTGTGGAAGCAGCCAAG 177
Query 77 GCAAGAAGAGTAGTTACCAAGATGCTGCTGTGGATCTAGGCAACAAATTGGTTTTAAGGA 136
|||||||||| |||||||||||||||||||| || || |||||| || |||||| |||||
Sbjct 178 GCAAGAAGAGCAGTTACCAAGATGCTGCTGTTGACCTCGGCAACGAACTGGTTTCAAGGA 237
Query 137 ACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCACAAGCTG 196
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 238 ATATTGATCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTG 297
Query 197 TTCATGATGGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCTAGAGAGT 256
|||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 298 TTCATGATGGTGGTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGT 357
Query 257 TGACCGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGGTATGCATCAAAGAAAAGCAG 316
|||| |||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |
Sbjct 358 TGACTGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTG 417
Query 317 AGATGGCTA-GACACTCTGATGCTTTTATTGCTTTACCAG 355
||||||||| | |||||||||||||||||||| |||||||
Sbjct 418 AGATGGCTAAG-CACTCTGATGCTTTTATTGCCTTACCAG 456
Score = 303 bits (164), Expect = 1e-81
Identities = 257/301 (85%), Gaps = 10/301 (3%)
Strand=Plus/Plus
Query 356 GTGGATATGGAACACTTGAAGAGCTT--TTGGAGGTCATAACATGGGCTCAGCTTGGTAT 413
|||| ||||||||||||||||| || || || |||||||| |||||||||||||||||
Sbjct 529 GTGGTTATGGAACACTTGAAGA-ATTGCTT-GAAGTCATAACTTGGGCTCAGCTTGGTAT 586
Query 414 ACATGACAAACCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTTTGCTCTCTTT 473
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 587 ACATGACAAGCCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTCTGCTCTCATT 646
Query 474 CATTGATAAAGCCGTTGAAGAAGG-TTTCATCAGTACGAAC-GCACGCCAGATCATAATT 531
|||||| ||||| || |||||||| ||| || || ||| | || || ||||||| |
Sbjct 647 CATTGACAAAGCAGTCGAAGAAGGATTT-ATTAGCCCGA-CTGCTCGTGAGATCATCGTC 704
Query 532 TCTGCACCTACTGCTAAGGAGCTTGT-AAAGAAGTTGGAGGAATATTCGCCTTGCCATGA 590
|| |||||||||||||| ||||| || ||| ||| | ||||||||| | |||||||||||
Sbjct 705 TCCGCACCTACTGCTAAAGAGCTGGTGAAA-AAGCTAGAGGAATATGCACCTTGCCATGA 763
Query 591 AAGTGTTGCCACTAAGCTTTGTTGGGAGATAGAGCGGATTGGCTACTCTTCTGAAGACTG 650
||| ||||| || ||||||||||||||||| || |||||||| ||||| |||||||| ||
Sbjct 764 AAGGGTTGCAACGAAGCTTTGTTGGGAGATGGAACGGATTGGTTACTCCTCTGAAGAGTG 823
Query 651 A 651
|
Sbjct 824 A 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5