BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348499
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54080.1 | Symbols: | Concanavalin A-like lectin family pro... 1389 0.0
AT3G54085.1 | Symbols: | Yos1-like protein | chr3:20026581-200... 435 7e-121
AT3G09190.1 | Symbols: | Concanavalin A-like lectin family pro... 65.8 1e-09
> AT3G54080.1 | Symbols: | Concanavalin A-like lectin family protein
| chr3:20025267-20027022 FORWARD LENGTH=1756
Length=1756
Score = 1389 bits (752), Expect = 0.0
Identities = 956/1052 (91%), Gaps = 24/1052 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAGCTTCATTCTCTCCAGGTCACTCCTGGTTCCGCTCTTGAT-TGTCATCTCATT 59
||||||||||||||||||||||||||| | || |||| ||| || | | ||| | ||||
Sbjct 131 ATGGCGAGCTTCATTCTCTCCAGGTCATTACTCGTTCTACTCCTG-TCTCTCACCGCATT 189
Query 60 GTTTTCCATAATCACCATTTCGGAAGCTGA-AACATCGTTCTCCTTCACAAGATCCGGTA 118
| |||| ||| | |||||||||||| | |||||||||| |||||||| |||||||
Sbjct 190 ACTCTCCAGCATCTCGATTTCGGAAGCT-ACCTCATCGTTCTCGTTCACAAGCTCCGGTA 248
Query 119 AAAATGCGAGCTTTGAGTCCGACGACTTTGCCCTGTACGGCAAAGCTAAGCTCGTGGACG 178
|||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||
Sbjct 249 AAAATGCGAGCTTTGAGTCCGAAGACTTTGCCCTGTACGGCGACGCTAAGCTCGTCGACG 308
Query 179 GCGGATCTTCGATTCAGCTGACTGACTCAGTGAGTCACGGTGGTGGGCGAGTCATCTACA 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 309 GCGGATCTTCGATTCAGCTGACTGACTCAGTGAGTCACGGTGGTGGGCGAGTCATCTATA 368
Query 239 AGAAACCCATTGAGTC-AGTGAAGAATATAAAATTCGAGTATTTCGCCGGATTCTCTACT 297
|||||||||||||||| | |||| ||||||||||||||||||||| ||||||||||||||
Sbjct 369 AGAAACCCATTGAGTCCA-TGAACAATATAAAATTCGAGTATTTCACCGGATTCTCTACT 427
Query 298 TTCTTCTCTTTCTCGATTTCTCCTAATCGTGGTGGGAGACTCGGATTTGTAGTGTTTCCT 357
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 428 TTCTTCTCTTTCTCGATTTCTCCTAGTCGTGGTGGGAGACTCGGATTTGTAGTGTTTCCT 487
Query 358 GTTAATGAAACATTCGATCACTCTTTATTCCAAGTAAAGTTCGATACTTGTGAAAATCTC 417
||||||||||| || |||||||||||||||||||||||||||||||||| ||| | | ||
Sbjct 488 GTTAATGAAACGTTTGATCACTCTTTATTCCAAGTAAAGTTCGATACTTTTGACAGTTTC 547
Query 418 ACCCAAATTGGAGATTCTTATGTCGCGGTGATTGTTGATGGTGCTACGGTTTCTGAGAGG 477
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 548 ACCCAAATTGGAGATTCTAATGTCGCGGTGATTGTTGATGGTGCTACGGTGTCTGAGAGG 607
Query 478 ATTCACAACTTCACGATTGCAAACTTGGATAAGACGGAGATGGTTTTGTTGTACGCTTGG 537
|||| ||| |||||||| ||||||||||| |||||||||| |||||||||||||||||||
Sbjct 608 ATTCGCAATTTCACGATCGCAAACTTGGAGAAGACGGAGAAGGTTTTGTTGTACGCTTGG 667
Query 538 ATTAATTACCAAGCTGGTGGCAAGTTCTTAGAAGTCCGGTTAAGCAAATCAAAAAGCTTT 597
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 668 ATTAATTACCAAGCTGGTGGCAAGTTCTTAGAAGTCCGGTTAAGTAAATCTAAAAGCTTT 727
Query 598 GAATCTGTTCTTCCTCTCATGTTTGATCGGATCGATTTGTCAGAAATGTTGAAACATGAG 657
||||||||||||||||| |||||||||| ||| ||||||||| ||||||||| | |||||
Sbjct 728 GAATCTGTTCTTCCTCTGATGTTTGATCAGATTGATTTGTCACAAATGTTGAGAGATGAG 787
Query 658 GATGAGTTCATGGTTGCTGTGAATTCTTATAGTGGGAATGTAAATCTTCATTCTTGGAGC 717
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 788 GATGAGTTCATGGTTGCTGTGAATTCGTATAGTGGGAATGTAAATCTTCATTCTTGGAGT 847
Query 718 TTAGAAGTGAGACACCCCGAGTATGAGCACTCTTGGGCGCCGGTGCTTTTGGAGGAACAA 777
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TTAGAAGTGAGACACTCCGAGTATGAGCACTCTTGGGCGCCGGTGCTTTTGGAGGAACAA 907
Query 778 CTTAGAAAAGAGGA--------G----G------CTGCGAAGAAGAGAAGAAGTGATAGG 819
|||||||||||||| | | ||||||||||||| | ||||||||||
Sbjct 908 CTTAGAAAAGAGGAACAACTTAGAAAAGAGGAGGCTGCGAAGAAGAGGACAAGTGATAGG 967
Query 820 ATGAGGGATATTGTGACTTGCGTAGTCATGACCTTTGGATCTACTGGTCTTGTGTTCTTC 879
||| |||| |||| |||||| | ||||||||||||||||| || || |||||||||||
Sbjct 968 ATGTGGGAGGTTGTCACTTGCTTCGTCATGACCTTTGGATCAACAGGGCTTGTGTTCTTT 1027
Query 880 GCCATGATGCATATATATGCAGCTTTCAAAAGGAACAATCTTGCCATGGTGATGCAGGAA 939
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1028 GCCATGATGCATATATATGCAGCTTTCAAAAGGAACAATCTTGCGATGGTGATGCAGGAG 1087
Query 940 GAATGTGGGATCAAGACCAAGGAGTTTGAGTATGAGAAGATGGAGAAAATGGAAGTTGTG 999
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1088 GAATGTGGGATCAAGACCAAGGAGTTTGGGTATAAGAAGATGGAGAAAATGGAAGTTGTG 1147
Query 1000 ATGAGTAAAACTGATGGGAAACAAGAAAGGAA 1031
| |||||| |||||| |||||||||||||||
Sbjct 1148 ACGAGTAATGCTGATGCGAAACAAGAAAGGAA 1179
Score = 435 bits (235), Expect = 7e-121
Identities = 253/262 (97%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 1032 TTTATCTTCATCTACACAAAATCTTCAACCGGAGATGAGTTTCAAGATGATGACTGCTGT 1091
|||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 1490 TTTATCTTCATCTACACAAAATCTTCAACCGGAGATAAGCTTCAAGACGATGACTGCTGT 1549
Query 1092 GTTAATGAGCATGAGGGGTAGTCTCATGTACTGGCAGGCATGGATTAGACCGATGATTTG 1151
||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 1550 GTTAATGAGCATGAGGGGTAGCCTCATGTACTGGCAGGCATGGATCAGACCAATGATTTG 1609
Query 1152 GCCTTTGGGAGAGTTTCTTCTACCAGTTTGGTGGAGTTCTCCGAGTGTCCATCCTCTTGG 1211
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1610 GCCTTTGGGAGAGTTTCTTCTATCGGTTTGGTGGAGTTCTCCGAGTGTCCATCCTCTTGG 1669
Query 1212 AACAAGGAAACGGTCTTCGTTGAGGATTGCCAGTGCATTTGCAAAGAGCAGCAGGCCTTT 1271
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1670 AACAAGGAAACGGTCTTCGTTGAGGATTGCCAGTGCATTTGCAAAGAGCAGCAGACCTTT 1729
Query 1272 TAACAATGTCCAGAAGCCCATT 1293
||||||||||||||||||||||
Sbjct 1730 TAACAATGTCCAGAAGCCCATT 1751
> AT3G54085.1 | Symbols: | Yos1-like protein | chr3:20026581-20027991
REVERSE LENGTH=533
Length=533
Score = 435 bits (235), Expect = 7e-121
Identities = 253/262 (97%), Gaps = 0/262 (0%)
Strand=Plus/Minus
Query 1032 TTTATCTTCATCTACACAAAATCTTCAACCGGAGATGAGTTTCAAGATGATGACTGCTGT 1091
|||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 358 TTTATCTTCATCTACACAAAATCTTCAACCGGAGATAAGCTTCAAGACGATGACTGCTGT 299
Query 1092 GTTAATGAGCATGAGGGGTAGTCTCATGTACTGGCAGGCATGGATTAGACCGATGATTTG 1151
||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 298 GTTAATGAGCATGAGGGGTAGCCTCATGTACTGGCAGGCATGGATCAGACCAATGATTTG 239
Query 1152 GCCTTTGGGAGAGTTTCTTCTACCAGTTTGGTGGAGTTCTCCGAGTGTCCATCCTCTTGG 1211
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 238 GCCTTTGGGAGAGTTTCTTCTATCGGTTTGGTGGAGTTCTCCGAGTGTCCATCCTCTTGG 179
Query 1212 AACAAGGAAACGGTCTTCGTTGAGGATTGCCAGTGCATTTGCAAAGAGCAGCAGGCCTTT 1271
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 178 AACAAGGAAACGGTCTTCGTTGAGGATTGCCAGTGCATTTGCAAAGAGCAGCAGACCTTT 119
Query 1272 TAACAATGTCCAGAAGCCCATT 1293
||||||||||||||||||||||
Sbjct 118 TAACAATGTCCAGAAGCCCATT 97
> AT3G09190.1 | Symbols: | Concanavalin A-like lectin family protein
| chr3:2821479-2822687 REVERSE LENGTH=1209
Length=1209
Score = 65.8 bits (35), Expect = 1e-09
Identities = 57/67 (85%), Gaps = 4/67 (6%)
Strand=Plus/Plus
Query 184 TCTTCGATTCAGCTGACTGACTCAGTGAGTC--ACGGTGGTGGGCGAGTCATCTACAAGA 241
|||||||||||||||||||||||||||| || || | || | |||||| | |||||||
Sbjct 163 TCTTCGATTCAGCTGACTGACTCAGTGAATCGGACCGAGG-GA-CGAGTCTTTTACAAGA 220
Query 242 AACCCAT 248
|||||||
Sbjct 221 AACCCAT 227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5