BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348614
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1247 0.0
> AT3G55250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 46 Blast hits to 46 proteins in 17 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20479289-20480634
FORWARD LENGTH=1157
Length=1157
Score = 1247 bits (675), Expect = 0.0
Identities = 784/837 (94%), Gaps = 6/837 (1%)
Strand=Plus/Plus
Query 1 ATGGTGGTTGTCACTCACATCTCCACTTCCTTCCACCAAATCTCTCCTTCCTTCTTCCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 ATGGTGGTTGTCACTCACATCTCCACTTCCTTCCACCAAATCTCTCCTTCCTTCTTCCAT 73
Query 61 CTCCGTCTTCGCAATCCCGCCTCGTCCCTTC--CCAAACGTGGCGGAGGATACGGTGGTA 118
||||||||||| |||||| || | | |||| | ||| | | ||||||||
Sbjct 74 CTCCGTCTTCGTAATCCCTCCAC--CACTTCTTCGTCTCGTCCCAAACTCGACGGTGGTT 131
Query 119 TCGCTTTGTCAATTCGAGCTTACATAGAGAAACCTAACTCCTTCTCCACCTTCGCTAACA 178
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 132 TCGCTTTGTCAATTCGAGCTTACATAGAGAAACCAAACTCTTTCTCCACCTTCGCTAACA 191
Query 179 AAGTCATCGGTTCGCTTCCGGTTATCGGACTCCTCGCTCGGATTCTCAGCGATGAAGGCG 238
||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct 192 AAGTCATCGGTTCTCTTCCCGTTATCGGACTCCTCGCTCGAATTATCAGCGATGAAGGCG 251
Query 239 GCGTTGGAAGAGATCTCGTCGATTTCGCTGAGTTTAGGAAACGAGTTGGGAATAAATGCA 298
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 252 GCGTTGGTAGAGATCTCGTCGATTTCGCTGAGTTTAGGAAACGAGTTGGGAATAAATGTA 311
Query 299 CTCCTGATGATTCTAGGGCTTTCTATGAGTTCCAACAGCGACGAGGCAAGGCAGGAGAAC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 312 CTCCTGATGATTCTAGGGCTTTCTATGAGTTCCAACAGCGACGAGGCAAGGCAGGTGAGC 371
Query 359 CTTTGTATGTGCTTCTATGTTGTTGGGTTGCTGCAGTAGGTGCAGGGCTTCTCAAATCTG 418
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 372 CTTTGTATGTGCTTCTGTGTTGTTGGGTTGCTGCAGTAGGTGCAGGTCTTCTCAAATCTG 431
Query 419 AAGAGATTCTTGAAGGTGTTACCAGAGTTAGCATTTCGAATGATCTTGAGTTTGAAGAAC 478
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 432 AAGAGATTCTTGAAGGTGTTACTAGAGTTAGCATTTCCAATGATCTCGAGTTTGAAGAAC 491
Query 479 AGAACTTCATTGCTTTGATGACTGAAGCTAGACAGAGAAGGGCAAAGTTGAACATTGATG 538
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 492 AGAACTTCATTGCTTTGATGACTGAAGCTAGACAGAGAAGAGCAAAGTTGAACATTGATG 551
Query 539 CGCCAATAATACCAATGGAACTAAGAGTCGAAAAGGCTCTTGAAGGTATTTATGCTTGTT 598
|||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 552 CGCCAACAATACCGATGGAACTAAGAGTTGAAAAGGCTCTTGAAGGTATTTATGCTTGTT 611
Query 599 GCTTTCGGAGAGGACTTATCGAAGAGGAGGATGAGAAGCTTCTTCAAGTGATGCTAATCG 658
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| |
Sbjct 612 GCTTTCGGAGAGGACTTATTGAAGAGGAGGATGAGAAGCTTCTTAAAGTGATGTTAATAG 671
Query 659 CAGTTTTCCCATCGGTTGAGAAGTCTGAGATAGAGAGAATCATCAAAGAGAAAGCGACAA 718
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 672 CGGTTTTCCCATCGGTTGAGAAGTCTGAGATAGAGAGAATCATCAAAGAGAAGGCGACAA 731
Query 719 GGGTTGCAG-AAGGAGGAGAAGAAGAGAATGTCATGGCGAAACGGTTGCCCAAAGAAGCT 777
|||||| || |||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 732 GGGTTG-AGGAAGGAGGAGAGGAAGAGAATGTTATGGCGAAACGGTTGCCTAAAGAAGCT 790
Query 778 ATTCAAATGCAGATGAAGGATCTTGAGTTCCTTCAACAACAAAACATAGAATCTTAA 834
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 791 ATTCAAATGCAGATGAAGGATCTTGAATTCCTTCAACAACAAAACATAGAGTCTTAA 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5