BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg348672

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G55860.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  93.5    2e-18


> AT3G55860.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G60660.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr3:20727591-20729618 REVERSE LENGTH=1366
Length=1366

 Score = 93.5 bits (50),  Expect = 2e-18
 Identities = 63/69 (91%), Gaps = 2/69 (3%)
 Strand=Plus/Plus

Query  359   TGGCGGTGGTT-CTCTCCCCAAGCCCAACCGAGGAGATACTACAGAACAACCAACTTCAA  417
             |||||||||||  | | |||||||||||||||||| |||| |||||||||||||||||||
Sbjct  1044  TGGCGGTGGTTGTTGT-CCCAAGCCCAACCGAGGAAATACAACAGAACAACCAACTTCAA  1102

Query  418   AATGAACCG  426
             |||||||||
Sbjct  1103  AATGAACCG  1111


 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 57/61 (93%), Gaps = 2/61 (3%)
 Strand=Plus/Plus

Query  258   TTACACTAACATGGCAA-GGACGTTGCATCCAGAGTTGTTTTCAGATGATACAAATACAT  316
             |||||| |||||||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct  986   TTACACGAACATGGCAAGGGA-GTTGCATCCAGAGTTGTTTTCAGATGATTCAAATACAT  1044

Query  317   G  317
             |
Sbjct  1045  G  1045



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21263257827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5