BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348673
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55870.1 | Symbols: | ADC synthase superfamily protein | ch... 2388 0.0
> AT3G55870.1 | Symbols: | ADC synthase superfamily protein |
chr3:20730858-20733903 FORWARD LENGTH=1963
Length=1963
Score = 2388 bits (1293), Expect = 0.0
Identities = 1491/1581 (94%), Gaps = 35/1581 (2%)
Strand=Plus/Plus
Query 4 AAGAAGGAGAATCTTGTTCCTCTTCGTCACACCATTTTCTCCGACCATCTCACTCCTGTT 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 259 AAGAAGGAGAATCTTGTTCCGCTTCGTCACACCATTTTCTCCGACCATCTCACTCCTGTT 318
Query 64 CTCGCTTACCGTTGTCTTGTCAAAGAAGATGATCAAGAGGCTCCAAGCTTT-CTTTTCGA 122
|| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 319 CTTGCTTACCGTTGTCTTGTCAAAGAAGATGATCAAGAGGCTCCAAG-TTTCCTTTTCGA 377
Query 123 ATCTGTTGAGCCAGGACATCACTCTTCCACTGTTGGAAGATATAGTGTCGTTGGAGCGCA 182
|||||||||||||||||||||||||||||| | | | | |||||||||||||||
Sbjct 378 ATCTGTTGAGCCAGGACATCACTCTTCCAC---T----G-T-T--TGTCGTTGGAGCGCA 426
Query 183 TCCGAAAATGGAAATTGTGGCTAAGGAGAACAAAGTGACAGTCATGGATCATGTTAAAGG 242
||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct 427 TCCGAAAATGGAAATTGTGGCAAAGGAGAATAAAGTTACAGTCATGGATCATGTGAAAGG 486
Query 243 CACTAAGACTACAGAGGAAGTTGAGGATCCAATGATGATTCCTAGAAGAATCTCAGAGAC 302
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 487 CACTAAGACTACAGAGGAAGTTGAAGATCCAATGATGATTCCTAGAAGAATCTCAGAGAC 546
Query 303 TTGGAAACCTCAATTGATCGATGATCTTCCTGATGTTTTTTGTGGTGGATGGGTTGGTTA 362
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TTGGAAACCACAATTGATCGATGATCTTCCTGATGTTTTTTGTGGTGGATGGGTTGGTTA 606
Query 363 CTTTTCTTATGATACTG-TCCGCTATGCTGAAAAACGAAAGCTACCTTTCTCCAAGGCTC 421
||||||||||||||||| ||| |||||| ||||| |||||||||||| |||| |||||||
Sbjct 607 CTTTTCTTATGATACTGTTCC-CTATGCCGAAAAGCGAAAGCTACCTCTCTCAAAGGCTC 665
Query 422 CGGTTGATGACCGGAATTTGCCAGACATGCATCTTGGTCTTTATGATGATGTGATTGTGT 481
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 666 CGGTTGATGACCGAAATTTACCAGATATGCATCTTGGTCTTTATGATGATGTGGTTGTGT 725
Query 482 TTGATCATGTCGAAAAGAAAATCCATATAATTCATTGGGTGAGGTTATCAGGAAACTCAT 541
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 726 TTGATCATGTCGAAAAGAAAATACATATAATTCATTGGGTGAGGTTATCAGAAAACTCAT 785
Query 542 CATTTGATGATGTTTATGGTAATGGTATGAAACACTTGGAAGAGCTTGTTTCGAGGATCA 601
|||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||
Sbjct 786 CATTTGATGATGTTTATGCTAATGCTGTGAAACACTTGGAAGAACTTGTTTCGAGGATCA 845
Query 602 AATGCATTAATCCCCCCAAGCTACCTTATGGATCAGTGGACTTACACACAAATCAATTTG 661
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 846 AATGCATGAATCCCCCCAAGCTACCTTATGGATCAGTGGACTTGCACACAAATCAATTTG 905
Query 662 GCACTCCTTTGGAGAAATCTAGCATGACAAGTGATGCGTATAAGAATGCTGTACTTCAGG 721
||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 906 GCACTCCTTTGGAAAAATCAAGCATGACAAGTGATGCATATAAGAATGCTGTACTTCAAG 965
Query 722 CCAAAGAACACATACTGGCTGGAGATATCTTTCAGATTGTTTTAAGTCAAAGATTTGAGC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 CCAAAGAACACATACTGGCTGGAGATATCTTTCAGATTGTTTTAAGTCAAAGATTTGAGC 1025
Query 782 GCCACACTTTTGCCCATCCGTTTGAAGTTTATCGAGCTTTGAGAATTGTGAACCCAAGTC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GCCACACTTTTGCCCATCCGTTTGAAGTTTATCGAGCTTTGAGAATTGTGAACCCAAGTC 1085
Query 842 CGTCTATGTGTTACTTGCAAGCAAGAGGTTGTATTCTAGTAGCTTCAAGTCCTGAAATTC 901
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1086 CTTCTATGTGTTACTTGCAAGCAAGAGGTTGTATTCTAGTAGCGTCAAGTCCTGAGATTC 1145
Query 902 TCACTAGAGTGAAGAAAAACAAGATCGTGAATAGACCACTAGCAGGAACTGCAAGGCGAG 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1146 TCACTAGAGTGAAGAAAAACAAGATCGTGAATAGACCACTAGCAGGAACTGCAAGACGAG 1205
Query 962 GCAAGAGTTTCGAAGAAGATCAAATGTTGGAGGAGACACTTTTAAAAGACGAAAAACAGT 1021
| ||||||||||| || |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1206 GAAAGAGTTTCGAGGAGGATCAAATGTTGGAGGAGGCACTTTTAAAAGATGAAAAACAGT 1265
Query 1022 GTGCTGAACACATTATGCTCGTTGACTTGGGTCGCAATGATGTTGGAAAGGTGTCCAAGA 1081
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GTGCAGAACACATCATGCTCGTTGACTTGGGTCGCAATGATGTTGGAAAGGTGTCCAAGA 1325
Query 1082 ACGGCTCAGTGAAAGTAGAAAGGCTCATGAATATAGAGCGTTATTCTCATGTCATGCATA 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 ACGGCTCAGTGAAAGTAGAAAGGCTCATGAATATAGAGCGTTATTCTCATGTCATGCATA 1385
Query 1142 TTAGCTCAACGGTGACTGGAGAGTTGCAAGAGAATCTGACTTGCTGGGACACTCTCCGTG 1201
||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1386 TTAGCTCAACGGTGATTGGAGAGTTGCAAGAGAATCTGACTTGCTGGGACACGCTTCGTG 1445
Query 1202 CGGCTTTACCAGTTGGAAC--T--G------T-----G---AAGGCTATGGAGTTAATCG 1243
| |||||||| |||||||| | | | | |||||||||||||| ||||
Sbjct 1446 CTGCTTTACCCGTTGGAACCGTTAGCGGAGCTCCAAAGGTGAAGGCTATGGAGTTGATCG 1505
Query 1244 ATGAGCTAGAGGTGACTAGAAGAGGTCCGTACAGTGGTGGATTCGGTAGTGTCTCATTCA 1303
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1506 ATGAGCTAGAGGTGACTAGAAGAGGTCCATATAGTGGTGGATTCGGTAGTGTCTCATTCA 1565
Query 1304 CTGGAGACATGGACATAGCTTTGGCTCTTAGGACCATTGTGTTCCCAACACAAGCTCGTT 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 CTGGAGACATGGACATAGCTTTGGCTCTTAGGACCATTGTGTTCCCAACACAAGCTCGTT 1625
Query 1364 ACGACACAATGTACTCATACAAAGACAAAGACACGCCTCGCCGTGAGTGGATAGCTTATC 1423
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1626 ACGACACAATGTACTCATACAAAGACAAAGACACGCCACGCCGTGAGTGGATAGCCTATC 1685
Query 1424 TGCAAGCAGGTGCAGGCATTGTAGCCGATAGTGACCCAGAGGATGAGCACCGTGAGTGCC 1483
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1686 TACAAGCAGGTGCAGGCATTGTAGCTGATAGTGACCCAGAGGATGAGCACCGTGAGTGTC 1745
Query 1484 AGAACAAAGCTGC-GGGACTCGCACGTGCCATTGACTTGGCTGAGTCTGCATTCGTTGAT 1542
||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1746 AGAACAAAGCTGCTGGG-CTAGCACGTGCCATTGACTTGGCTGAGTCTGCATTCGTTGAT 1804
Query 1543 AAAATTGATACAACCATCTAG 1563
|||| ||||||||| ||||||
Sbjct 1805 AAAAGTGATACAACAATCTAG 1825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77158237665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5