BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg348691

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56080.1 | Symbols:  | S-adenosyl-L-methionine-dependent met...   353    6e-97


> AT3G56080.1 | Symbols:  | S-adenosyl-L-methionine-dependent methyltransferases 
superfamily protein | chr3:20810309-20813036 
REVERSE LENGTH=2098
Length=2098

 Score =  353 bits (191),  Expect = 6e-97
 Identities = 213/224 (95%), Gaps = 0/224 (0%)
 Strand=Plus/Plus

Query  1     ATGTCATTTGCTCCAAAAGACGAACACGAAGCTCAGATTCAGTTAGCACTAGAACGAGGA  60
             |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| 
Sbjct  808   ATGTCATTTGCTCCTAAAGACGAACACGAAGCTCAGATTCAGTTCGCACTGGAACGAGGG  867

Query  61    ATTCCCGCTACTCTGGCTGTTATTGGAACTCAAAAGCTTCCTTTTCCTGATAATGGTTAC  120
             ||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  868   ATTCCCGCTACACTCGCTGTTATTGGAACTCAAAAGCTTCCTTTTCCTGATAATGCTTAC  927

Query  121   GACGTTATCCATTGCGCTAGATGCAGAGTCCATTGGCATGGATACGGTGGTAGACCACTT  180
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  928   GACGTAATCCATTGCGCTAGATGCAGAGTCCATTGGCATGGATACGGTGGTAGACCACTT  987

Query  181   TTGGAACTTAACCGGGTTCTAAAGCCTGGAGttttttttGTTTG  224
             |||||||||||||||||||||| ||||||||  |||||||||||
Sbjct  988   TTGGAACTTAACCGGGTTCTAAGGCCTGGAGGGTTTTTTGTTTG  1031


 Score =  283 bits (153),  Expect = 8e-76
 Identities = 168/175 (96%), Gaps = 1/175 (1%)
 Strand=Plus/Plus

Query  225   CAATGG-GTCATTGACCACATCAATGTGTTGGAAAGTTGTGGCTAGAACTCGATTCACTA  283
             |||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1085  CAATGGAGTCTTTGACTACATCAATGTGTTGGAAAGTTGTGGCTAGAACTCGATTCACTA  1144

Query  284   AAGTTGGATTCGTTATTTACCAGAAACCAGACTCAGATTCTTGTTATGAATCGCGTAAAG  343
             ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct  1145  AAGTTGGATTCGTGATTTACCAGAAACCAGACTCAGATTCTTGTTATGAATCTCGTAAAA  1204

Query  344   ACAAAGATCCGCCTCTCTGCATCGAAGAAGAGACCAAGAAGAACAGTTCATGGTA  398
             |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1205  ACAAAGATCCGCCTCTCTGCATTGAAGAAGAGACCAAGAAGAACAGTTCATGGTA  1259



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5