BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg348692

Length=816
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G62870.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   217    2e-55


> AT1G62870.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G12380.1); 
Has 351 Blast hits to 343 proteins in 42 species: Archae - 
2; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 299; Viruses 
- 0; Other Eukaryotes - 18 (source: NCBI BLink). | chr1:23284012-23286760 
REVERSE LENGTH=2749
Length=2749

 Score =  217 bits (117),  Expect = 2e-55
 Identities = 130/136 (96%), Gaps = 2/136 (1%)
 Strand=Plus/Plus

Query  1     ATGGAGGATCATATGGCTAGAGAGGTTGGTGAAATGGTTGGGGATGTCGGGTTTTGGAAC  60
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1690  ATGGAGGATCATATGGCTAGAGAGGTTGGTGAAATGGTTGGAGATGTCGGGTTTTGGAAC  1749

Query  61    GAGGTAGAGGCGGTTTATTCTCT-GTTGAAGCTCGTTAAAGAAATGGCTCGAAGAATAGA  119
             ||||||||||||||||||| | | ||||||||| ||||||||||||||||| ||||||||
Sbjct  1750  GAGGTAGAGGCGGTTTATT-TGTTGTTGAAGCTTGTTAAAGAAATGGCTCGGAGAATAGA  1808

Query  120   GGAAGAGAGGCCTTTG  135
             ||||||||||||||||
Sbjct  1809  GGAAGAGAGGCCTTTG  1824



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39735210277


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5