BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348708
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56230.1 | Symbols: | BTB/POZ domain-containing protein | c... 1249 0.0
> AT3G56230.1 | Symbols: | BTB/POZ domain-containing protein |
chr3:20860778-20862265 REVERSE LENGTH=1100
Length=1100
Score = 1249 bits (676), Expect = 0.0
Identities = 783/835 (94%), Gaps = 5/835 (1%)
Strand=Plus/Plus
Query 1 ATGCCATCTATTTTAAGACCACCTAGGAACACAATATGTGGATCGTGCTACGAAGGGGCT 60
||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 155 ATGCCATCTATATTAAGACCACCAAGAAACACAATATGTGGATCATGCTACGAAGGGGCT 214
Query 61 AGAACCACTATCGCCCTGCTCAAGAAACTTGAGGGCTCGAAAGAAGA---TCATGAAAAA 117
||||| || || || |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 215 AGAACAACAATTGCGCTGCTCAAGAAACTTGAGGGCTCGAAAGAAGATCGTCATGACAAA 274
Query 118 TCGAACCATAAATCCACCGTCAATAATGGCTCCTCTCTTTCTTCTTCTCCTTTGTTTTCT 177
||||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 275 TCGAACCATAATTCCACCATCAATAATGGCTCCTCTATTTCTTCGTCTCCTTTGTTTTCT 334
Query 178 TGTGAGCCGCAACCATTAGAGAAGGTGATCAAATGGATgaaaaacatgaaagaaaccgaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TGTGAGCCGCAACCATTAGAGAAGGTGATCAAATGGATGAAAAACATGAAAGAAACCGAA 394
Query 238 gaagaacagaagaaaagGATAGTCTTCTTGAGCAGCTTTGTTTCGGGTTTCAAAGAACAG 297
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 395 GAAGAACAGAAGAAAAGAATAGTCTTCTTAAGCAGCTTTGTGTCGGGTTTCAAAGAACAG 454
Query 298 CTTCATGCTGATATTCTTCTAAAACCTGGCGACGATGGCCCTCCAATTCCTGCACATAGA 357
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 455 CTTCATGCTGATATTCTTCTAAAACCGGGCGATGATGGCCCTCCAATTCCTGCACATAGA 514
Query 358 GCTTTGCTGGCTTCAAAATCTGAGATCTTCAAGAACATTCTAGACTCCGACGGATGCAAA 417
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 515 GCTTTGCTGGCTTCAAAATCTGAGATCTTTAAGAACATTCTAGACTCAGATGGATGCAAA 574
Query 418 ACCGCTCCAGAATACGCGATAACGCTCCAAGAGCTGAATTCTGAGCAACTTCAAGCTCTC 477
||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||
Sbjct 575 ACCGCTCCAGAATACGCCATAACGCTCCAAGAACTAAATTCCGAGCAACTTCAAGCTCTC 634
Query 478 TTGGAGTTTCTATACACCGGCACATTGGCTTCAGACAAGTTGGAGAAACATATTTATGCA 537
|||||||||||||||||||| |||||||||||||| |||||||||||| || | || ||
Sbjct 635 TTGGAGTTTCTATACACCGGTACATTGGCTTCAGATAAGTTGGAGAAAAATGTCTACGCG 694
Query 538 TTGTTTCTTGCAGCAGATAAGTACATGATTCATTACTTGCAAGAGTTGTGCGAGCAATAT 597
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 TTGTTTATTGCAGCAGATAAGTACATGATTCATTACTTGCAAGAGTTGTGCGAGCAATAT 754
Query 598 ATGTTGAGTTCCTTAGACATTTCTAGTGTTCTTGACGTTCTTGATGTCTCGGATCTTGGT 657
||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 755 ATGTTAAGTTCCTTGGACATCTCTAGTGTTCTTAACGTTCTTGATGTCTCGGATCTTGGT 814
Query 658 TCAAGCACGACGCTGAAGGAGGCTTGTCTAAGATTCGTGATGCGGAACATGGACGACGTC 717
|| |||| ||||||||||||||||||| || | |||||| ||||||||||||||||||||
Sbjct 815 TCGAGCAAGACGCTGAAGGAGGCTTGTGTAGGGTTCGTGGTGCGGAACATGGACGACGTC 874
Query 718 GTTTTCTCGGATAAGTACGAAG-TGTTCTCTCAGAAAAACCAACATCTATGTGTGGAGAT 776
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 875 GTTTTCTCGGATAAGTACGAACCT-TTCTCTCAGAAAAACCAACATCTATGTGTGGAGAT 933
Query 777 CACAAGGGCGTTCTTGATGGAAACGAGAAGCAAGAGACGTGATTTATCAAATTAG 831
|||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 934 CACAAGGGCGTTCTTGATGGAAACGAGAAGCAAGAGACGTGACTAATTAAATTAG 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5