BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348712
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56280.1 | Symbols: | pseudogene, protein kinase family, co... 1314 0.0
> AT3G56280.1 | Symbols: | pseudogene, protein kinase family,
contains protein kinase domain, Pfam:PF00069; blastp match of
44% identity and 9.2e-11 P-value to GP|3947676|emb|CAA21067.1||AL031652
dJ1119D9.1 (PAK5 (KIAA1264) (P21-Rho-binding domain
containing serine/threonine protein kinase)) {Homo sapiens}
| chr3:20876567-20877445 FORWARD LENGTH=879
Length=879
Score = 1314 bits (711), Expect = 0.0
Identities = 818/870 (94%), Gaps = 6/870 (1%)
Strand=Plus/Plus
Query 223 TCGAGTTCGTGGATGTTAGACGCGACCACCTTACCAAAACTTGGCTGTCTCGGCCAAGGC 282
||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 13 TCGAGTTCGTGGATGTTAGACCCGATCACCTTACGAAAACTTGGCTGTCTCGGCCAAGGC 72
Query 283 CACCATGGCTACATCTCTCTCGTGAAAACCCCCGATGGTCTACTCATGGCTAAGAAAACA 342
| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 73 GAGCATGGCTACATCTCTCTCGTTCAAACCACCGATGGTTTACTCATGGCTAAGAAAACA 132
Query 343 TCTCACCGCAAATACTCAGAGGATCTCGAGAAAGAACTA-AGGATCTTACATCACTTCAA 401
|||| |||||||||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct 133 TCTCTCCGCAAATACTCAGAGAATCTCGAGAAAGAAC-AGAGGATCTTACATCACTTCAA 191
Query 402 CTCCATCAATTTCAACATCGTAAGACCCACAAGCCCTATCATCTATTACGAAACCATGCC 461
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 192 CTCGATCAATTTCAACATCGTAAGACCCACAAGCCCTATCGTCTATTACGAAACCATGCC 251
Query 462 GGTAAATGTCAAGATCTGCTCTATTTACATGGAAATCGCACCACATGGTTCACTCGAAGA 521
| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 252 GTTCAATGTCAAGATCTGCTCAATTTACATGGAAATCGCACCACATGGTTCACTCGGAGA 311
Query 522 CATGATGACCAAAGCCGGTGGGAGATTACCGGAGAACGTGGTCGGGTACTGCACTCTCTT 581
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CATGATAATCAAAGCCGGTGGGAGATTACCGGAGAACGTGGTCGGGTACTGCACTCTCTT 371
Query 582 GATTCTTGAAGGACTCAAGGATCTTCACAAAGATGGTTACGTCCACTGTGATCTCATGCC 641
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 372 GATTCTTGAATGACTCAAGGATCTTCACAAAGATGGTTACGTTCACTGTGATCTCGGGCC 431
Query 642 AGAGAACATACTTATCTTCCCGACCTACACTCATGGAGAGCTTTGTGAACTCAAACTTGC 701
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 432 AGAGAACATGCTTATCTTCCCGACCTACACTCATGGAGAGCTTTGTGAACTCAAACTCGC 491
Query 702 TGATTTCGGTTTAGCCAAGGAGCCTAATGGACCTAATCCATTGGATGGGTCTCTGTTCCA 761
||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 492 TGATTTCGGCTTAGCAAAAGAGCCTAATGGACCTAATCCATTGGATGGATCTCTCTTCGA 551
Query 762 GGGAAATCC-GGAGTATTTGGCTCCAGAGGCGGTCGGGCCATGTCGAATTATTTCGTCTG 820
|||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GGGATGTCCTGCA-TATTTGGCTCCAGAGGCGGTCGGGCCATGTCGAATTATTTCGTCTG 610
Query 821 CGGTTGATATTTGGTCTTTAGGTGTTATGGTAATTGAGATGTTGGGGGCTAATGTAGGAG 880
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct 611 CGGTTGATATTTGGTCTTTAGGTGTTATGGTAATCGAGATGTTGGGGGTTAATGGAGGAG 670
Query 881 GAAGAAATGATTACTTGTCAGAGACGCTATCACCGATGGCTTGGGACTTTGTGAGGAAAT 940
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 671 GAAGAAATGATTACTTGTCACAGACGCTATCATCGATGGCTTGGGACTTTGTGAGGAAAT 730
Query 941 GCAAAGTGCGTGATTGGGAG-GATAGAGCCACCGCAGAGGAGCTGCTGAGCCATCCTTTT 999
||||||||| ||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 731 GCAAAGTGCATGACTGGGAGAG-TAGAGCCACCGCAGAGGAGCTGCTGAGCCATCCTTTC 789
Query 1000 GTTAACCAAAGTATTGGGGTTCCACCGCTTGAGATGCTTCCTGTTCCTCATTGCTTAACT 1059
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 790 GTTAACCAAAGTATTGGGGTTCCACCGTTTGAGATGCTTCCTGTTCCTTATTGCTTAACT 849
Query 1060 GACGGAGTGGTTCAAGGAAGGtttttttGA 1089
|| ||||||||||||||||||||||| |||
Sbjct 850 GATGGAGTGGTTCAAGGAAGGTTTTTCTGA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5