BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg348734 Length=1956 Score E Sequences producing significant alignments: (Bits) Value AT3G56550.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2645 0.0 > AT3G56550.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:20952292-20954641 REVERSE LENGTH=2157 Length=2157 Score = 2645 bits (1432), Expect = 0.0 Identities = 1714/1849 (93%), Gaps = 24/1849 (1%) Strand=Plus/Plus Query 1 ATGTGCGAGAAAGCGAGAGTGATAGTGAGAATGCTACAAGGCTGCAACAGCATGAACAAG 60 |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 1 ATGTGCGAAAAAGCGAGAGTGATAGTGAGAATGCTACAAGGATGCAACAGTATGAAGAAG 60 Query 61 CTCCGTAAGAttcattctcatgtcatcatcaatggtctccatcatcatccttccatcttc 120 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 CTCCGTAAGATCCATTCTCATGTCATCATCAATGGTCTCCAACATCATCCTTCCATCTTC 120 Query 121 aaccatctcctccGCTTCTGCGCCGTCTCCGTCACCGGCTCTTTGTCTTACGCTCAGCTT 180 ||||| ||||||||||||||||||||||||||||| || ||||| ||| ||||||| ||| Sbjct 121 AACCACCTCCTCCGCTTCTGCGCCGTCTCCGTCACTGGTTCTTTATCTCACGCTCAACTT 180 Query 181 CTCTTCGACCGTTTCGATTCTGATCCATCAACGTCGGCTTGGAACTACCTTATCCGTGGC 240 |||||||||| ||||||||| ||||||||||| |||| ||||||||||||||| |||||| Sbjct 181 CTCTTCGACCATTTCGATTCCGATCCATCAACATCGGATTGGAACTACCTTATTCGTGGC 240 Query 241 TTCTCC-ATATCTTCTTCTCCTCTTTATACGATTCTCTACTATAATCGAATGCTTCTCTC 299 |||||| || |||||||||||||| || ||||||||| |||||| |||||||||||||| Sbjct 241 TTCTCCAAT-TCTTCTTCTCCTCTAAATTCGATTCTCTTCTATAACCGAATGCTTCTCTC 299 Query 300 CTCTGTTTCACGTCCTGATATCTTCACTTTCAGTTTTGCTCTCAAAGCATGTGAGAGGAT 359 ||||||||||||||||||| |||||||||||| ||| ||||||||| ||||||||||||| Sbjct 300 CTCTGTTTCACGTCCTGATCTCTTCACTTTCAATTTCGCTCTCAAATCATGTGAGAGGAT 359 Query 360 CCGATTGATTCCGAAATGTTTGGAGCTTCACGGTTCGGTTATTCGATCTGGGTTTCTTGC 419 || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 360 TAAATCGATTCCGAAATGTTTGGAGATTCACGGTTCGGTTATTCGATCTGGGTTTCTTGA 419 Query 420 TGATGCTATTGTTTCCACTAATCTCGTTCGTTGCTACTCTGCGAATGGAAGTGTTGAGAT 479 ||| ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 420 TGACGCTATTGTTGCCACTAGTCTCGTTCGTTGTTACTCTGCGAATGGAAGTGTTGAGAT 479 Query 480 TGCATCCAAAGTGTTCGACGAAATGCCTGTTAGAGACTTAGTTTCTTGGAACGCTATGAT 539 |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 480 TGCATCTAAAGTGTTCGACGAAATGCCTGTTAGAGACTTGGTTTCTTGGAACGTTATGAT 539 Query 540 CTCCTGTTTTTCTCATGCTGGTTTACATCATCAGGCGTTCAGTATGTAC-AGTCGAATGG 598 || || |||||||||| |||||||||| |||| ||||| ||||||||| || ||||||| Sbjct 540 CTGTTGCTTTTCTCATGTTGGTTTACATAATCAAGCGTTGAGTATGTACAAG-CGAATGG 598 Query 599 CAAATGAAGGTGTGTGTGTTGACGCTTACACGATAGTTGCTTTGTTATCTTCTTGTGCTC 658 ||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||| Sbjct 599 GAAATGAAGGTGTGTGTGGTGACTCTTACACGCTCGTTGCTTTGTTATCTTCTTGTGCTC 658 Query 659 ACGTTAGTGCTTTGAATATGGGAGTTATGCTACACAGGATCGCCTGTGATATTCGATGTG 718 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 659 ACGTTAGTGCTTTGAATATGGGAGTTATGCTACACAGGATAGCCTGTGATATTCGATGTG 718 Query 719 AGAGTAGTGTCTTTGTGTGTAATGCTCTTATTGATATGTATGCAAAATGTGGTAGCCTTG 778 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 719 AGAGTTGTGTCTTTGTGAGTAATGCTCTTATTGATATGTATGCAAAATGTGGTAGCCTTG 778 Query 779 AAAATGCTGTTGGTGTGTTTAAAGGGATGCGGAAGAGAGATGTGTTGACCTGGAACTCAA 838 |||||||| ||||||||||||| |||||||| || ||||||||||||||||||||||||| Sbjct 779 AAAATGCTATTGGTGTGTTTAACGGGATGCGAAAAAGAGATGTGTTGACCTGGAACTCAA 838 Query 839 TGATTATTGGGTATGGAGTTCATGGGCACGGCGTAGAGGCCATCTCATTCTTCAGAAAGA 898 |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct 839 TGATTATTGGGTATGGAGTTCACGGGCATGGCGTAGAGGCCATCTCGTTCTTCAGAAAGA 898 Query 899 TGGTGGCTTCCGGGGTTAGACCCAATGCCGTCACATTCCTCGGATTGTTGTTAGGTTGTA 958 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 899 TGGTGGCTTCCGGGGTTAGACCCAATGCCATCACATTCCTTGGATTGTTGTTAGGTTGTA 958 Query 959 GTCATCAAGGTCTAGTTAAAGAAGGAGTTGAGCATTTTGAAATCATGAGTTCACAGTTCC 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 GTCATCAAGGTCTAGTTAAAGAAGGAGTTGAGCATTTTGAAATCATGAGTTCACAGTTCC 1018 Query 1019 ATTTGACTCCGAACGTCAAACACTATGGATGCATGGTGGATCTCTTTGGACGAGCAGGTC 1078 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1019 ATTTGACTCCGAACGTCAAACACTATGGATGCATGGTGGATCTCTATGGACGAGCAGGTC 1078 Query 1079 AGCTAGAAAAGGCCCTTGAGATGATACACACGTCTTCCTGCCATGAAGATCCTGTCTTGT 1138 |||||||||| |||| ||||||||| | |||||||||||||||| ||||| ||||||| Sbjct 1079 AGCTAGAAAACTCCCTCGAGATGATATATGCGTCTTCCTGCCATGAGGATCCCGTCTTGT 1138 Query 1139 GGAGAACCCTGCTTGGCTCTTGCAAAATCCACAGGAATTTGGAATTAGGAGAAGTAGCCA 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 GGAGAACCCTGCTTGGCTCTTGCAAAATCCACAGGAATTTGGAATTAGGAGAAGTAGCCA 1198 Query 1199 TGAAGAAATTGGTGCAGCTTGAGGCTTTCAATGCAGGGGATTATGTGCTTATGACTTCGA 1258 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1199 TGAAGAAATTGGTGCAGCTTGAGGCTTTCAATGCAGGGGACTATGTGCTTATGACTTCGA 1258 Query 1259 TATATTCTGCTGCAAATGATGCACAAGGTTTTGCTAGTATGAGAAAACTAATAAGAAGCC 1318 |||||||||| || |||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 1259 TATATTCTGCAGCGAATGATGCGCAAGCTTTTGCTAGTATGAGAAAACTAATAAGAAGCC 1318 Query 1319 ATGATTTACGGACTA-TTCCAGGCTGGAGTTGGATTGAGATCGGTGATCAAGTTCACAAA 1377 ||||||||| ||| | ||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1319 ATGATTTACAGAC-AGTTCCAGGATGGAGTTGGATTGAGATTGGTGATCAAGTTCACAAA 1377 Query 1378 TTTGTCATTGATGACAAAATGCATCCGGAGTCTGCACTTATTTACTCAGAACTCGGGGAA 1437 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1378 TTTGTCGTTGATGACAAAATGCATCCGGAGTCTGCAGTTATTTACTCAGAACTCGGGGAA 1437 Query 1438 GTAATCAACCGTGCCATTCTAGCTGGATACAAGCCAGAGGACTCGAACAGAACTGCTCAT 1497 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 1438 GTAATCAACCGTGCCATTCTAGCTGGATACAAGCCAGAGGACTCAAACAGAACTGCTCCT 1497 Query 1498 ACTCTTTCTGATCGGTGTTTAGAATCTGCAGATACATCTCACAGTGAAAAATTGGCTATT 1557 ||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 1498 ACTCTCTCTGATCGGTGTTTAGGATCTGCAGATACATCTCATAGTGAAAAATTGGCTATT 1557 Query 1558 GCATATGGATTAATGAGAACTACTGCAGGAACAACTCTCCGGATCACAAAGAATCTGAGA 1617 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1558 GCATATGGATTAATGCGAACTACTGCAGGAACAACTCTCCGAATCACAAAGAATCTGAGA 1617 Query 1618 GTTTGCAGAGATTGTCATTCATTTACAAAATATGTATCAAAAGCATTCAATCGGGAAATT 1677 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1618 GTTTGCAGAGATTGTCATTCGTTTACAAAATATGTATCAAAAGCATTCAATCGGGAAATT 1677 Query 1678 ATTGTAAGGGATAGAGTTCGATTTCATCAGTTTGCAGGCGA-ATTGATAGTTATT-CG-C 1734 ||||||||||||||||||||||||||||| ||||||| | ||| | ||| || | | Sbjct 1678 ATTGTAAGGGATAGAGTTCGATTTCATCACTTTGCAGATGGTATT--T-GTTCTTGCAAC 1734 Query 1735 G--TG-T--T-ATACT--CTCTTGGTGTTTTG-TTAAAA---TTATCACCACAAGACTCC 1782 | | | | | | || || || | | |||||| || | ||||||||| ||| Sbjct 1735 GACTACTGGTGAAAAAAACTGTTCTTGGTCAGCTTAAAAGAATTTTTACCACAAGATTCC 1794 Query 1783 TTAAAAGGAAAAGTGAGAGAGACAGGAGATGAGACAATCATTGACACAG 1831 |||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 1795 TTAAAAGGAAAAGTGAGAGAGAGAAGAGATGAGACAATCATTGACACAG 1843 Score = 80.5 bits (43), Expect = 6e-14 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 1829 CAGAGGTCGTGATTATGGTCTGGAACAAGAATATAACAGAGACGCGAAA 1877 ||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 2109 CAGAGGTCGTGCTTATGGTCTGGAACAAGAATATAACAGAGACACGAAA 2157 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96887051850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5