BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348734
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56550.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2645 0.0
> AT3G56550.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:20952292-20954641 REVERSE LENGTH=2157
Length=2157
Score = 2645 bits (1432), Expect = 0.0
Identities = 1714/1849 (93%), Gaps = 24/1849 (1%)
Strand=Plus/Plus
Query 1 ATGTGCGAGAAAGCGAGAGTGATAGTGAGAATGCTACAAGGCTGCAACAGCATGAACAAG 60
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1 ATGTGCGAAAAAGCGAGAGTGATAGTGAGAATGCTACAAGGATGCAACAGTATGAAGAAG 60
Query 61 CTCCGTAAGAttcattctcatgtcatcatcaatggtctccatcatcatccttccatcttc 120
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CTCCGTAAGATCCATTCTCATGTCATCATCAATGGTCTCCAACATCATCCTTCCATCTTC 120
Query 121 aaccatctcctccGCTTCTGCGCCGTCTCCGTCACCGGCTCTTTGTCTTACGCTCAGCTT 180
||||| ||||||||||||||||||||||||||||| || ||||| ||| ||||||| |||
Sbjct 121 AACCACCTCCTCCGCTTCTGCGCCGTCTCCGTCACTGGTTCTTTATCTCACGCTCAACTT 180
Query 181 CTCTTCGACCGTTTCGATTCTGATCCATCAACGTCGGCTTGGAACTACCTTATCCGTGGC 240
|||||||||| ||||||||| ||||||||||| |||| ||||||||||||||| ||||||
Sbjct 181 CTCTTCGACCATTTCGATTCCGATCCATCAACATCGGATTGGAACTACCTTATTCGTGGC 240
Query 241 TTCTCC-ATATCTTCTTCTCCTCTTTATACGATTCTCTACTATAATCGAATGCTTCTCTC 299
|||||| || |||||||||||||| || ||||||||| |||||| ||||||||||||||
Sbjct 241 TTCTCCAAT-TCTTCTTCTCCTCTAAATTCGATTCTCTTCTATAACCGAATGCTTCTCTC 299
Query 300 CTCTGTTTCACGTCCTGATATCTTCACTTTCAGTTTTGCTCTCAAAGCATGTGAGAGGAT 359
||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||||
Sbjct 300 CTCTGTTTCACGTCCTGATCTCTTCACTTTCAATTTCGCTCTCAAATCATGTGAGAGGAT 359
Query 360 CCGATTGATTCCGAAATGTTTGGAGCTTCACGGTTCGGTTATTCGATCTGGGTTTCTTGC 419
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 TAAATCGATTCCGAAATGTTTGGAGATTCACGGTTCGGTTATTCGATCTGGGTTTCTTGA 419
Query 420 TGATGCTATTGTTTCCACTAATCTCGTTCGTTGCTACTCTGCGAATGGAAGTGTTGAGAT 479
||| ||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 420 TGACGCTATTGTTGCCACTAGTCTCGTTCGTTGTTACTCTGCGAATGGAAGTGTTGAGAT 479
Query 480 TGCATCCAAAGTGTTCGACGAAATGCCTGTTAGAGACTTAGTTTCTTGGAACGCTATGAT 539
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 480 TGCATCTAAAGTGTTCGACGAAATGCCTGTTAGAGACTTGGTTTCTTGGAACGTTATGAT 539
Query 540 CTCCTGTTTTTCTCATGCTGGTTTACATCATCAGGCGTTCAGTATGTAC-AGTCGAATGG 598
|| || |||||||||| |||||||||| |||| ||||| ||||||||| || |||||||
Sbjct 540 CTGTTGCTTTTCTCATGTTGGTTTACATAATCAAGCGTTGAGTATGTACAAG-CGAATGG 598
Query 599 CAAATGAAGGTGTGTGTGTTGACGCTTACACGATAGTTGCTTTGTTATCTTCTTGTGCTC 658
||||||||||||||||| |||| |||||||| | |||||||||||||||||||||||||
Sbjct 599 GAAATGAAGGTGTGTGTGGTGACTCTTACACGCTCGTTGCTTTGTTATCTTCTTGTGCTC 658
Query 659 ACGTTAGTGCTTTGAATATGGGAGTTATGCTACACAGGATCGCCTGTGATATTCGATGTG 718
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 ACGTTAGTGCTTTGAATATGGGAGTTATGCTACACAGGATAGCCTGTGATATTCGATGTG 718
Query 719 AGAGTAGTGTCTTTGTGTGTAATGCTCTTATTGATATGTATGCAAAATGTGGTAGCCTTG 778
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGAGTTGTGTCTTTGTGAGTAATGCTCTTATTGATATGTATGCAAAATGTGGTAGCCTTG 778
Query 779 AAAATGCTGTTGGTGTGTTTAAAGGGATGCGGAAGAGAGATGTGTTGACCTGGAACTCAA 838
|||||||| ||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 779 AAAATGCTATTGGTGTGTTTAACGGGATGCGAAAAAGAGATGTGTTGACCTGGAACTCAA 838
Query 839 TGATTATTGGGTATGGAGTTCATGGGCACGGCGTAGAGGCCATCTCATTCTTCAGAAAGA 898
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 839 TGATTATTGGGTATGGAGTTCACGGGCATGGCGTAGAGGCCATCTCGTTCTTCAGAAAGA 898
Query 899 TGGTGGCTTCCGGGGTTAGACCCAATGCCGTCACATTCCTCGGATTGTTGTTAGGTTGTA 958
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 899 TGGTGGCTTCCGGGGTTAGACCCAATGCCATCACATTCCTTGGATTGTTGTTAGGTTGTA 958
Query 959 GTCATCAAGGTCTAGTTAAAGAAGGAGTTGAGCATTTTGAAATCATGAGTTCACAGTTCC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTCATCAAGGTCTAGTTAAAGAAGGAGTTGAGCATTTTGAAATCATGAGTTCACAGTTCC 1018
Query 1019 ATTTGACTCCGAACGTCAAACACTATGGATGCATGGTGGATCTCTTTGGACGAGCAGGTC 1078
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1019 ATTTGACTCCGAACGTCAAACACTATGGATGCATGGTGGATCTCTATGGACGAGCAGGTC 1078
Query 1079 AGCTAGAAAAGGCCCTTGAGATGATACACACGTCTTCCTGCCATGAAGATCCTGTCTTGT 1138
|||||||||| |||| ||||||||| | |||||||||||||||| ||||| |||||||
Sbjct 1079 AGCTAGAAAACTCCCTCGAGATGATATATGCGTCTTCCTGCCATGAGGATCCCGTCTTGT 1138
Query 1139 GGAGAACCCTGCTTGGCTCTTGCAAAATCCACAGGAATTTGGAATTAGGAGAAGTAGCCA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GGAGAACCCTGCTTGGCTCTTGCAAAATCCACAGGAATTTGGAATTAGGAGAAGTAGCCA 1198
Query 1199 TGAAGAAATTGGTGCAGCTTGAGGCTTTCAATGCAGGGGATTATGTGCTTATGACTTCGA 1258
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 TGAAGAAATTGGTGCAGCTTGAGGCTTTCAATGCAGGGGACTATGTGCTTATGACTTCGA 1258
Query 1259 TATATTCTGCTGCAAATGATGCACAAGGTTTTGCTAGTATGAGAAAACTAATAAGAAGCC 1318
|||||||||| || |||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1259 TATATTCTGCAGCGAATGATGCGCAAGCTTTTGCTAGTATGAGAAAACTAATAAGAAGCC 1318
Query 1319 ATGATTTACGGACTA-TTCCAGGCTGGAGTTGGATTGAGATCGGTGATCAAGTTCACAAA 1377
||||||||| ||| | ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1319 ATGATTTACAGAC-AGTTCCAGGATGGAGTTGGATTGAGATTGGTGATCAAGTTCACAAA 1377
Query 1378 TTTGTCATTGATGACAAAATGCATCCGGAGTCTGCACTTATTTACTCAGAACTCGGGGAA 1437
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1378 TTTGTCGTTGATGACAAAATGCATCCGGAGTCTGCAGTTATTTACTCAGAACTCGGGGAA 1437
Query 1438 GTAATCAACCGTGCCATTCTAGCTGGATACAAGCCAGAGGACTCGAACAGAACTGCTCAT 1497
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1438 GTAATCAACCGTGCCATTCTAGCTGGATACAAGCCAGAGGACTCAAACAGAACTGCTCCT 1497
Query 1498 ACTCTTTCTGATCGGTGTTTAGAATCTGCAGATACATCTCACAGTGAAAAATTGGCTATT 1557
||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1498 ACTCTCTCTGATCGGTGTTTAGGATCTGCAGATACATCTCATAGTGAAAAATTGGCTATT 1557
Query 1558 GCATATGGATTAATGAGAACTACTGCAGGAACAACTCTCCGGATCACAAAGAATCTGAGA 1617
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1558 GCATATGGATTAATGCGAACTACTGCAGGAACAACTCTCCGAATCACAAAGAATCTGAGA 1617
Query 1618 GTTTGCAGAGATTGTCATTCATTTACAAAATATGTATCAAAAGCATTCAATCGGGAAATT 1677
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GTTTGCAGAGATTGTCATTCGTTTACAAAATATGTATCAAAAGCATTCAATCGGGAAATT 1677
Query 1678 ATTGTAAGGGATAGAGTTCGATTTCATCAGTTTGCAGGCGA-ATTGATAGTTATT-CG-C 1734
||||||||||||||||||||||||||||| ||||||| | ||| | ||| || | |
Sbjct 1678 ATTGTAAGGGATAGAGTTCGATTTCATCACTTTGCAGATGGTATT--T-GTTCTTGCAAC 1734
Query 1735 G--TG-T--T-ATACT--CTCTTGGTGTTTTG-TTAAAA---TTATCACCACAAGACTCC 1782
| | | | | | || || || | | |||||| || | ||||||||| |||
Sbjct 1735 GACTACTGGTGAAAAAAACTGTTCTTGGTCAGCTTAAAAGAATTTTTACCACAAGATTCC 1794
Query 1783 TTAAAAGGAAAAGTGAGAGAGACAGGAGATGAGACAATCATTGACACAG 1831
|||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1795 TTAAAAGGAAAAGTGAGAGAGAGAAGAGATGAGACAATCATTGACACAG 1843
Score = 80.5 bits (43), Expect = 6e-14
Identities = 47/49 (96%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1829 CAGAGGTCGTGATTATGGTCTGGAACAAGAATATAACAGAGACGCGAAA 1877
||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 2109 CAGAGGTCGTGCTTATGGTCTGGAACAAGAATATAACAGAGACACGAAA 2157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96887051850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5