BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348782
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21700.1 | Symbols: | Protein of unknown function (DUF2921)... 1050 0.0
> AT4G21700.1 | Symbols: | Protein of unknown function (DUF2921)
| chr4:11529956-11532844 FORWARD LENGTH=2889
Length=2889
Score = 1050 bits (568), Expect = 0.0
Identities = 660/703 (94%), Gaps = 12/703 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACTTTTTGGCC-GCCTTCTTCATCTTCAAACTACCCTTCAATATTCCTTTATTT 59
||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGCGACTTTTTGGCCATCC-TCTTCATCTTCAAACCACCCTTCAATATTCCTTTATTT 59
Query 60 ACAATCATACCCTTTTCTCTTCTTCCTCCTCTTTCTGACCACCTCTGCAACTTCACTCAC 119
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 ACAATCATACCCTTCTCTCTTCTTCCTCCTCTTTCTTACCACCTCTGCAACTTCACTCAC 119
Query 120 CCTTGCATCCTTAGTGAATCCTCACTCTTACATATCCCCACGAGTCCCTTATTCCGATCA 179
| ||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||
Sbjct 120 CGTTGCATCCTTAGTGAATCCTCACTCTTTCATAGCTCCACGAATCCCTTATTCCGATCA 179
Query 180 CTGCAACCACATAGTTCCGGAGTCTCCGATCGACCCATCTCCCTCCGCCGTATTCAGCCG 239
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 CTGCAACCACATAGTTCCAGAGTCTCCGATCGACCCATCTCCCTCCGCTGTATTCAGCCA 239
Query 240 TGCGTCGCTTGCTTTCGATGTCAGCTTCTTCTCCGGCGGCGACTCT-TTCTTCAATCGGT 298
|| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 240 CGCATCGCTTGCTTTCGATGTCAGCTTCTTCTCCGGCGGCGACT-TGTTCTTCAATCGGT 298
Query 299 ATCAATCACAGAATGGTGATGTTAAATCAGCTAGATTCAGACCCATGTCAATCCGCAAAA 358
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 299 TTCAATCACAGAATGGTGATGTTAAATCAGCTAGATTTAGACCCAAATCAATCCGTAAAA 358
Query 359 CGTTGGGTGATGGGAAGATTTACAAGGTTGAAGAC-AAATTGACTTTACAAATCTCAAAA 417
| ||||| |||||||||||||||||||| |||| | |||||||||||||||||||| |||
Sbjct 359 CTTTGGGAGATGGGAAGATTTACAAGGTGGAAG-CGAAATTGACTTTACAAATCTCCAAA 417
Query 418 ACCTCAGCTTTTTCTTCTTATTACGGCGGCGATTTTGGCAAGAAAAAGCTTCAGGTAACG 477
||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 418 ACCTCTGCTTCTTCTTCTTATTACGGCGGCGATTTTGGCCAGAAAAAGCTTCAGGTAATG 477
Query 478 CATATCGACGGACGTAGCTCTTGGGGAGGAGCAAGTTTCGATTTTT-CTGGGTTTTGGTC 536
|| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 478 CAGATCGACGGACGTAGCTCTTGGGGAGGAGCAAGTTTCGATTTTTAC-GGGTTTTGGTC 536
Query 537 GGAATCTACAGGACAAGTTTGTATGGTTGGATCAACTCAAGTTTTATCTGTGGAAGGTAC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGAATCTACAGGACAAGTTTGTATGGTTGGATCAACTCAAGTTTTATCTGTGGAAGGTAC 596
Query 597 T-GATTTGAAG-TCCTTTGATGCTCGTCTTATGCTTAATTATTCCAATGAGTCTAATATC 654
| | ||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 597 TCG-TTTGAAGATC-TTTGATGCTCGTCTTATGCTTAACTATTCCAAGGAGTCTAATATC 654
Query 655 TATGGAAGTTTGGTTAAGGGAGTGTTAGAGAGCGTGAATAGCC 697
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct 655 TATGGAAGTTTGGTTAAGGGAGTGTTAGAGAGCGTGGATAGCC 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5