BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348875
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65870.1 | Symbols: | Disease resistance-responsive (dirige... 676 0.0
AT3G58090.1 | Symbols: | Disease resistance-responsive (dirige... 538 4e-152
> AT1G65870.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr1:24503624-24504193 FORWARD
LENGTH=570
Length=570
Score = 676 bits (366), Expect = 0.0
Identities = 490/550 (89%), Gaps = 8/550 (1%)
Strand=Plus/Plus
Query 385 CTTCTTCCTCTGTTCTCAGCTCTTCTTTTCGCGGCCACCATTACAGAATCCGAAGCTTAC 444
|||||||||||||||| ||||||| || |||| ||||||||||||||||| || ||| |
Sbjct 25 CTTCTTCCTCTGTTCTTAGCTCTTATTCTCGCAGCCACCATTACAGAATCAAAATCTTTC 84
Query 445 TCAACAACAGTGAAGGCACCGTATCCAGGACATAAACCGGAGAAGCTAACCCACCTACAC 504
|||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct 85 TCAACAACAGTGAAGGCACCATATCCAGGACATAAACCGGATAAGCTAACCCACTTACAC 144
Query 505 TTCTACTTCCACGACATTATCTCCGGGA-ACAAACCAACCGCCGTCCCAGTTGCTAGGGG 563
|||||||||||||||||| ||||| ||| ||||||||||| |||||| ||| |||| ||
Sbjct 145 TTCTACTTCCACGACATTGTCTCC-GGAGACAAACCAACCTCCGTCCAAGTCGCTAACGG 203
Query 564 TCCTGCAACAAACTCCTCTGCAACCAGCTTCGCTTTGGTTGCAATCGCTGACGATC-CAT 622
||| | |||||||| ||||| ||| | |||| |||||||||| ||| |||||| | ||
Sbjct 204 TCCAACCACAAACTCTTCTGCCACCGGTTTCGGTTTGGTTGCAGTCGTTGACGA-CAAAT 262
Query 623 TGACGATTGGGCCTGAAAGAACCTCAGAGGAAATCGGGAGAGCCCAAGGGATGTATGCAT 682
||||| | |||||||||| |||||||||||| | |||||||||||||| ||||||||||
Sbjct 263 TGACGGTCGGGCCTGAAATTACCTCAGAGGAAGTTGGGAGAGCCCAAGGAATGTATGCAT 322
Query 683 CGGCTGACCAGAACAA-CTTTGGTCTGCTTATGGCTTTTAACTTGGTTTTCACCAAGGGT 741
|||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 323 CGGCTGACCAGAACAAGC-TTGGTCTGCTTATGGCTTTTAACTTGGTTTTCACGAAGGGT 381
Query 742 GAATTTTCCGGCAGCACCGCGTCGATGTATGGCCGGAATCC-GATATTGTCGAAGCTGAG 800
||||||||| |||||||| | ||||||||||||||||||| | ||||||||||| ||||
Sbjct 382 AAATTTTCCGACAGCACCGTGGCGATGTATGGCCGGAATCCTG-TATTGTCGAAGGTGAG 440
Query 801 AGAGATGCCGATCATCGGAGGTACGGGAGCATTCAGGTTCGCAAGAGGATATGCACAGGC 860
|| ||||||||||| |||||||||||||| |||||||||| ||||||||||||| |||
Sbjct 441 GGAAATGCCGATCATTGGAGGTACGGGAGCTTTCAGGTTCGGAAGAGGATATGCATTGGC 500
Query 861 CAAGACTTTTGTGTTCAATATTACCAGTGGAGATGCTGTTGTCGAGTATAATGTCTATAT 920
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 501 CAAGACTTTGGTGTTCAATATTACCAGTGGAGATGCTGTGGTCGAATATAATGTCTATAT 560
Query 921 CTGGCATTAA 930
|||||||||
Sbjct 561 TTGGCATTAA 570
> AT3G58090.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr3:21512319-21514281 REVERSE
LENGTH=1044
Length=1044
Score = 538 bits (291), Expect = 4e-152
Identities = 321/336 (96%), Gaps = 0/336 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAACACTGGGAGCATTAAGCAAGAAGCACCGTCTCTTCCTCCGGGGATCTTCGAG 60
|||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||
Sbjct 69 ATGGAGGACACTGGGAGCATTAAGCAAGAAGCACAGTCTCATCCTCCAGGGATCTTCGAG 128
Query 61 ATACCGGGGGAGCCTGCGGTTGTTATCAATGGTGTGCCTGATGAACCGCAAACAGATTGT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 129 ATACCGGGGGAGCCTGCGGTTGTTATCAATGGTGTGCCTGATGAACCTCAAACTGATTGT 188
Query 121 ATGATTGCCAAAGATGAACCAATATCAAGTGGCACTGTAGGAAGCGGCGAATGGCTTGTG 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 189 ATGATTGCCAAAGATGAACCAATATCAAGTGGCACTGTAGGAAGCGGGGAATGGCTTGAG 248
Query 181 GGTAGAGAAGTTCGGAAGttttttttGGGTCACTACTATTCTGGTATGGTGACAAAGTTC 240
|||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 249 GGTAGAGAAGTTCGCAAGTTTTTCTTGGGTCGCTACTATTCTGGTACGGTGACAAAGTTC 308
Query 241 GATAAACAATCGGGATGGTACAGAGTTGAATATGAAGATGGGGATTCTGAAGATCTTGAC 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GATAAACAATCTGGATGGTACAGAGTTGAATATGAAGATGGGGATTCTGAAGATCTTGAC 368
Query 301 TGGTCTGAGCTAGAAGAGGTGCTTCTACCTTTGGAT 336
||||||||||| ||||| ||||||||||||||||||
Sbjct 369 TGGTCTGAGCTTGAAGAAGTGCTTCTACCTTTGGAT 404
Score = 414 bits (224), Expect = 6e-115
Identities = 293/326 (90%), Gaps = 6/326 (2%)
Strand=Plus/Plus
Query 608 TCGCTGACGATC-CATTGACGATTGGG-CCTGAAAGAACCTCAGAGGAAATCGGGAGAGC 665
||| |||||| | ||||||| |||| ||||||| ||||||||||||| | ||||||||
Sbjct 562 TCGTTGACGA-CATATTGACG-GTGGGACCTGAAATAACCTCAGAGGAAGTTGGGAGAGC 619
Query 666 CCAAGGGATGTAT-GCATCGGCTGACCAGAACAACTTTGGTCTGCTTATGGCTTTTAACT 724
|||||| || | | |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 620 CCAAGGAAT-TTTCGCATCGGCCGACCAGAACAACTTTGGTCTGCTTATGGCTTTCAACT 678
Query 725 TGGTTTTCACCAAGGGTGAATTTTCCGGCAGCACCGCGTCGATGTATGGCCGGAATCCGA 784
| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 679 TTGTTTTCACAAAGGGTGAATTTTCCGGCAGCACCGTGTCCATGTATGGCCGGAATCCGA 738
Query 785 TATTGTCGAAGCTGAGAGAGATGCCGATCATCGGAGGTACGGGAGCATTCAGGTTCGCAA 844
|||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 739 TATTTTCGAAGGTGAGAGAGATGCCGATCATCGGAGGTACTGGAGCATTCAGGTTCGGAA 798
Query 845 GAGGATATGCACAGGCCAAGACTTTTGTGTTCAATATTACCAGTGGAGATGCTGTTGTCG 904
||||||||||||| |||||||||||| |||||||| |||||||||| ||||||| |||
Sbjct 799 GAGGATATGCACAAGCCAAGACTTTTACGTTCAATACTACCAGTGGAAATGCTGTGGTCA 858
Query 905 AGTATAATGTCTATATCTGGCATTAA 930
|||||||||| ||||| |||||||||
Sbjct 859 AGTATAATGTTTATATTTGGCATTAA 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5