BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348900
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58310.1 | Symbols: | Domain of unknown function (DUF26) | ... 1103 0.0
AT3G22060.1 | Symbols: | Receptor-like protein kinase-related ... 259 3e-68
> AT3G58310.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:21584038-21585030 REVERSE LENGTH=777
Length=777
Score = 1103 bits (597), Expect = 0.0
Identities = 720/780 (92%), Gaps = 6/780 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCATCCTCCGTATCAAAACGCATCGTTTTGGTCCTTAACTTGGCCGTGGTAGCC 60
||||||||||||| | || |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1 ATGTCTTCATCCTTCATACCAAAACGCATCGCTTTGGTCCTTAACTTGGCCATGGTAGCC 60
Query 61 ACACAAGTCCTCCCTATACGCAGCGTCTCGTCCATGAACAAGACTAACGCGTATCTATAC 120
| ||||||| || ||||||||| || |||||||||||| |||| ||| | |||||||||
Sbjct 61 ATACAAGTCTTCTTTATACGCAGTGTTTCGTCCATGAACGAGACCAACTCATATCTATAC 120
Query 121 CACAAATGCTCTGAAATTGAAGGGAAATACAAG-CCGAAGAGCCCGTACGAAGAAAACCT 179
||||||||||| || |||||||||||||||| || |||||||||||||||| ||||||
Sbjct 121 CACAAATGCTCCGAGGCTGAAGGGAAATACAAGTCC-AAGAGCCCGTACGAAGGAAACCT 179
Query 180 TAACTTTATCATCAATGACATGTATAAAGACACTTTTGTAAGAGGTTTCGTCTACGCCTA 239
|||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 180 CAACTTTCTCACCAATGACATGTATAAAGACACTTTTGTAAGAGGTTTTGTCTATGCCTA 239
Query 240 TCATGGTGACGATCCCAATACCGTCTATATCTTGCTCCAATGCCGGGGTGACTCCTACGG 299
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 240 TCATGGTGACGATCCCAATACCGTCTACATCTTGCTCCAGTGCCGGGGTGACTCCTACGG 299
Query 300 C-CCAAAGTGTGGCTCCTGCCTCACTACCGCCTCCTCGGAGCTACGTAGAAGATGTCCGA 358
| || |||||||| ||||||||| | || ||| |||| ||||| |||||||||||||| |
Sbjct 300 CTCC-AAGTGTGGTTCCTGCCTCTCCACTGCCACCTCCGAGCTGCGTAGAAGATGTCCTA 358
Query 359 TGAACAAGGCGGGAATAGTATGGTTTGACAAGTGTCTTCTCAAGTTTTCTCCAACGGCTT 418
|||||||||||||||||||||||||||| || |||||||||||| |||||||||| ||||
Sbjct 359 TGAACAAGGCGGGAATAGTATGGTTTGATAAATGTCTTCTCAAGATTTCTCCAACCGCTT 418
Query 419 TCTTCGAGAAGATCGATGACAAGAACAAGTTCTATATGTACAGCACAAAGAAAGTAAGCG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTTCGAGAAGATCGATGACAAGAACAAGTTCTATATGTACAGCACAAAGAAAGTAAGCG 478
Query 479 ATCCGGCGTCGTTCAATGCGAAGACAAAAGCTCTACTAACTGAGCTGACCACGAAAG-CT 537
|||| |||| |||||||| ||||||||| |||||||| |||||||||||| | |||| ||
Sbjct 479 ATCCAGCGTTGTTCAATGTGAAGACAAAGGCTCTACTCACTGAGCTGACCGC-AAAGGCT 537
Query 538 ACTCGTAGATCAGATAAGTTATTGTTGTACGAGACGGGGGAGATGAAACTCGGGAAGATG 597
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 538 ACTCGCAGATCAGATAAGTTATTGTTGTACGAGACAGGGGAGATGAAACTCGGGAAGATG 597
Query 598 AAGCTGTACGGAATGGTGCAGTGTACACGGGACCTATGGTTTACGGTTTGTAAGACGTGT 657
||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 598 AAGCTTTACGGAATGGTGCAGTGTAGACGGGATTTATGGTTTACGGTTTGTAAGACGTGT 657
Query 658 TTGGATAAGATTATTGGGGAGCTTCCTAAATGTTGTGATGGTAAAGAAGGAGGGAGAGTT 717
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTGGATAAGATTATAGGGGAGCTTCCTAAATGTTGTGATGGTAAAGAAGGAGGGAGAGTT 717
Query 718 GTGAGTGGGAGTTGTAACTTTAGGTATGAGATTTACCCTTTTCTTGACACTGTTCGATGA 777
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 718 TTGAGTGGGAGTTGTAACTTTAGATATGAGATTTACCCTTTTCTTGACACTGTTCGATGA 777
> AT3G22060.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr3:7771016-7772340 FORWARD LENGTH=1011
Length=1011
Score = 259 bits (140), Expect = 3e-68
Identities = 351/448 (78%), Gaps = 33/448 (7%)
Strand=Plus/Plus
Query 337 GAGCTACGT-AGAAGATGTCCGATGAACAAGGCGGGAATAGTATGGTTTGACAAGTGTCT 395
||||||||| || |||||||||| |||||||||||||||||||||| |||||| |||||
Sbjct 374 GAGCTACGTCAG-AGATGTCCGAACAACAAGGCGGGAATAGTATGGTATGACAACTGTCT 432
Query 396 TCTCAAGT-TTTCTCCAACGGCTTTCTTCGAGAAGATCGATGACAAGAACAAGTTCTATA 454
| | |||| || || | || |||||||| |||||| ||| | |||||| |||||||
Sbjct 433 TGTAAAGTATTCCT-CGACCAATTTCTTCGGGAAGATAGATTTCGAGAACAGGTTCTATT 491
Query 455 TGTACAGC-ACAAAGAAAGTAAGCGATCCGGCGTCGTTCAA-TGCGAAGACAAAAGCTCT 512
|||||| | |||| || || || ||||| | | ||||| | || |||| ||||||||
Sbjct 492 TGTACAACGTCAAA-AATGTGAGTGATCCATCAACATTCAACT-CGCAGACGAAAGCTCT 549
Query 513 ACTAACTGAGCTGACCACGAAA--G-CTACTCGTAGATCA-GATAAGTTATTGTTGTACG 568
|||| |||||||| | |||| | ||||| | |||| | | ||| || | ||| |
Sbjct 550 TTTAACCGAGCTGACAAAGAAAGCGACTACTAG-AGATAACCAGAAGCTA-T-TTG--C- 603
Query 569 AGACGGGGGAGATGAAA-CTCGGGAAG-ATGAAGCTGTACGGAATGGTGCAGTGTAC-AC 625
||| || |||| ||| |||| ||| || || |||||||| | ||||| ||||| |
Sbjct 604 -GACAGGAGAGA-AAAATATCGGAAAGAAT-AAATTGTACGGACTAGTGCAATGTACGA- 659
Query 626 GGGACCT-ATG-GT-TTACGGTTTGTAAGACGTGTTTGGATAAG-ATTATTGGGGAGCTT 681
||||| | | | || |||| ||||||| ||||||| || | |||||||||||||||
Sbjct 660 GGGACTTGAAGAGTATTAC---TTGTAAGGCGTGTTTAAAT-GGAATTATTGGGGAGCTT 715
Query 682 CCTAAATGTTGTGATGGTAAAGAAGGAGGGAGAGTTGTGAGTGGGAGTTGTAACTTTAGG 741
||||| ||||| || |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 716 CCTAACTGTTGCGACGGTAAAGAAGGAGGGAGAGTTGTGGGTGGGAGCTGTAACTTTAGG 775
Query 742 TATGAGATTTACCCTTTTCTTGACACTG 769
|||||||||||||||||| || | ||||
Sbjct 776 TATGAGATTTACCCTTTTGTTAAGACTG 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5