BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348938
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58720.2 | Symbols: | RING/U-box superfamily protein | chr3... 918 0.0
> AT3G58720.2 | Symbols: | RING/U-box superfamily protein | chr3:21716866-21717948
REVERSE LENGTH=895
Length=895
Score = 918 bits (497), Expect = 0.0
Identities = 563/595 (95%), Gaps = 3/595 (1%)
Strand=Plus/Plus
Query 117 AGATTTAGTACCACCATCACACACTCGGCATCGGATTCCAATCCGTAACAGCAACAACCT 176
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 241 AGATTTAGTACCACCATCACATACTCGGCATCAGATTCCAATCCGTAACAGCAACAACCT 300
Query 177 ACGAAGACAGCACCTCGAGGCACTAAGACAAGCCGTTCACAACGAACCCGCTAGACCCGA 236
|||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 301 GCGAAGACAACACCTCGAGGCACTAAGACAAGCCGTTCACAACCAATCAACTAGACCCGA 360
Query 237 GAGCAGCTCAAGATCATCATCACAAACCAATGAAGAAGACGAAATCCTCAAACATCTAAC 296
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 GAGCAGCTCAAGATCATCATCACAAACCAATGAAGAAGACGAGATCCTCAAACATCTAAC 420
Query 297 AAAAGAGACATATAACCCAGTCCCAAAAAGCACCCTTCTCAGAAGCCTGAGCTTATACTA 356
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAAGAAACATATAACCCAGTTCCAAAAAGCACCCTTCTCAGAAGCCTGAGCTTATACTA 480
Query 357 CAGAAACAAAAACCCGGGAAGCGAAAACTCAAGAAACACTCAAGATCTCTCTGGTGAAGA 416
|||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct 481 CAGAAACAAAAACCCGGGAAGCGAAAGCTCAAGAAACACTCAAAATCTCTCAGGTGAAGA 540
Query 417 AGACGACAAGAGATGCTCCGTGTGTTTAGAAGACTTCGAGCCCAAGGAAACAGTGATGCT 476
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGACGACAAAAGATGCTCCGTGTGTTTAGAAGACTTCGAGCCCAAGGAAACAGTGATGCT 600
Query 477 CACTCCTTGCAAACACATGTTTCATGAGGAATGTATAATTCCATGGTTAAAGACCAAAGG 536
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 601 CACTCCTTGCAAACACATGTTTCACGAGGAATGTATAGTTCCATGGTTAAAGACCAAAGG 660
Query 537 ACAGTGTCCTGTCTGTAGATTCGTCATACTCAAGCCGGCAAAACAAGATTCTTCTC-TCA 595
||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct 661 ACAATGTCCTGTCTGTAGATTCGTCATACTCAAGCCGACAAAACAAGACTCTTCTCCTCC 720
Query 596 --CTAATGGATCAAATCTTGCCAGAGACATGACAATGGATGATCTCTTAACATTAGAGCT 653
|||||||||||||||| || |||||||||||| | |||||||||| |||||||||||
Sbjct 721 GGCTAATGGATCAAATCTCACCGGAGACATGACAACGAATGATCTCTTCACATTAGAGCT 780
Query 654 ACTCTCTGTGGTAAGAGCAATGGAAGAAACTTTCCTTTTCGGTTATCCACGTCGC 708
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 781 ACTCTCTGTGGTAAGAGCAATGGAAGAAACTTTCCTTTTCGGTAATCCTCGTCGC 835
Score = 189 bits (102), Expect = 3e-47
Identities = 112/117 (96%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 ATGGCTATTCTTCTGCTCCAAATCAACCCAATTATAGTTATGATTCTGATACACGATCAT 60
|||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 57 ATGGCTATTCCTCTGTTCCAAATCAACCCAATTATAGTTATGATTCGGATACACGATCGT 116
Query 61 CGGGTTGGCGAGTTCCTGCTTTCTCTTCGCGGAATGCTTGGTCCAGGAGTAATTCAA 117
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 117 CGGGTTGGCGAGTTCCTGCTTTCTCTTCGCGGAATGCTTGGTCTAGGAGTAATTCAA 173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5