BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348948
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58800.1 | Symbols: | unknown protein; Has 75 Blast hits to... 1419 0.0
> AT3G58800.1 | Symbols: | unknown protein; Has 75 Blast hits
to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes
- 5 (source: NCBI BLink). | chr3:21748228-21749928 FORWARD
LENGTH=1515
Length=1515
Score = 1419 bits (768), Expect = 0.0
Identities = 957/1045 (92%), Gaps = 26/1045 (2%)
Strand=Plus/Plus
Query 85 GTGATGTTGAAGCGTAGC-GACAAAGGGAAATCTTCGCATGGATCTCGAATGCATCAATT 143
|||||||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 146 GTGATGTTGAAGCGTA-CTGACAAATGGAAATCTTCGCATGGATCTCGAATCCATCAATT 204
Query 144 CGGACTTGTTTTCGTTGTTGGGATCTTATTGGTCGCGGTTCTGTTATTTTGTTTCAGTGG 203
||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 205 CGGACTTGTTTTCGTTGTTGGGATCTTCCTGGTGGTGGTTCTGTTATTTTGTTTCAGTGG 264
Query 204 CAAGAATCAGAGCACGAAACTGGAACT---GGAAC-GA-C-CGACACAGATCTCTAA--- 254
||||||||||||||||||| || |||| | ||| || | | | ||| || || ||
Sbjct 265 CAAGAATCAGAGCACGAAAATGCAACTACCGAAACAGATCTCTA-ACA-ATGTC-AAGCC 321
Query 255 C--ACTGC---C-AAGCCAGCAGTAGAGATTCAGAACGGGACTCAATTGATATGGACGAT 308
| | ||| | ||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct 322 CGAATTGCAATCTCAGCCAACATTAGAGATTCAGAACGAGACTCAATTGATATGGACGAT 381
Query 309 ACCAAATTCACCAAAAGCAGTTCTGTTTATTGCTCATGGTTGCCATAGGAAAGCTTCTGA 368
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 382 ACCAAATTCACCAAAAGCAGTTCTGTTTATAGCTCATGGTTGCCACAGGAAAGCTTCAGA 441
Query 369 CTTTTGGGACAAATCTTCAGATTGTCCTGAATGTACTGGTCTACCAGAGGAGAGGATTCT 428
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 442 CTTTTGGGACAAATCTTCAGATTGTCCTCAATGTACTGGCCTACCAGAGGAGAGGATTCT 501
Query 429 TATCCGATTTGCTCTAGCTCGAAAGTTCACTGTTTTAACTGTATCTAGTGCTGGAACATG 488
||| |||||||| |||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 502 TATGCGATTTGCCCTAGCTCGAAAGTTTGCTGTTTTAACTGTATCTAGCACTGGAACATG 561
Query 489 CTGGACATTCGGGAAGGAAAAATCGATTGTTGGAAAG-ATGATAAAATCGTGGGTCGATA 547
||||||||| |||||||||||| |||||||||| ||| || ||||||||||||||||| |
Sbjct 562 CTGGACATTTGGGAAGGAAAAAACGATTGTTGG-AAGTATAATAAAATCGTGGGTCGAGA 620
Query 548 AGCATAAGCTCGAAAGGCTTCCGCTTGTTGGGTTAGGGGCTTCATCTGGTGGCTACTTTG 607
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 621 AGCATAAGCTCGAAAGACTTCCGCTTGTTGCGTTAGGGGCTTCATCTGGTGGCTACTTTG 680
Query 608 TCTCTGCTCTTGCAACAGATATGCAGTTTAGTAGCATTGTGCTTATGATTGCCGAAGGAG 667
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 681 TCTCGGCTCTTGCAACAGAAATGCAGTTTAGTAGCATTGTGCTTATGATTGCTGAAGGAG 740
Query 668 TCTTTGATAAAATTAGTATCAGTAAACAGTATCCGCCGACTCT-TTTCGTGCACATGCCT 726
|||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 741 TCTTTGATCAAATTAGTATCAGTAAACAGTATCCGCCTACTCTGTTT-GTGCACATGCCT 799
Query 727 AAAGATGTGTATAGACAACAAAAGATTAGAGAGTTTTTAGAAGGTCTCAGAATGGAAGGC 786
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 800 AAAGATGTGTATAGACAACAAAAGATTAGAGAGTTCTTAGAAGGTCTTAGAATGGAAGGT 859
Query 787 ATTGATGCTGCCGAAATTGAATGCTTGGATTTACCGATTTCCCCAGAGTTCTTGGCAGAT 846
||||||||||| || ||||||||||||||||| |||||||| || || ||||||||||||
Sbjct 860 ATTGATGCTGCAGAGATTGAATGCTTGGATTTGCCGATTTCTCCGGATTTCTTGGCAGAT 919
Query 847 AGGATTCCAGGTCTTCG-CCCGGATGTCTCGACCAAGCTGTTCAAGTTATTTCAAGACAA 905
||||||||||||||| | | ||||||||| |||| || || ||||| |||| ||||||
Sbjct 920 AGGATTCCAGGTCTT-GATTCAGATGTCTCGGCCAAACTATTTAAGTTGTTTCGAGACAA 978
Query 906 AGGATTTGTTGATGAGAAGGGATACATGAAACGTGATGGAAGGAGAACACCGTGGAAACA 965
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 979 GGGATTTGTTGATGAGAAGGGATACATGAAACGTGATGGACGGAGAACACCGTGGAAACA 1038
Query 966 AGCTCTCAGTGGCTACAAAATATCACTGGAACAAAGTTTGATTACTCCTGTTGAGGAAGA 1025
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1039 AGCTCTTAGTGGCTACAAAATATCACTGGAGCAAAGTTTGATTACTCCTGTTGAGGAAGA 1098
Query 1026 ACTGAATCTTGCATATGCATATCATGAGATGACGAGCTTGCAGTCTGATCAAATCTTTAG 1085
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1099 ACTGAATCTTGCATATGCATATCATGAGATGACGAGCTTGCAGTCTGATCAAATATTCAG 1158
Query 1086 CTGGTTTGAATCGCATATGAGCTAA 1110
|||||||||||||||||||||||||
Sbjct 1159 CTGGTTTGAATCGCATATGAGCTAA 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5