BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349013
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59500.1 | Symbols: | Integral membrane HRF1 family protein... 1336 0.0
> AT3G59500.1 | Symbols: | Integral membrane HRF1 family protein
| chr3:21986541-21988326 FORWARD LENGTH=1071
Length=1071
Score = 1336 bits (723), Expect = 0.0
Identities = 774/799 (97%), Gaps = 2/799 (0%)
Strand=Plus/Plus
Query 1 ATGGGACCCCAGCCTGGAATGCCAATGCCTCAGGTTAATCCTCAGCCTAGCCCGTTTGGG 60
|||||||||| |||||||||| |||||||||||| ||||||||||||||||| ||||||
Sbjct 117 ATGGGACCCCGGCCTGGAATGGCAATGCCTCAGGCAAATCCTCAGCCTAGCCCATTTGGG 176
Query 61 AATCCGTTCTCTGGACCTGGCTCTGGACTTATCCGGAGTGGCTTGGGTGCTTATGGGGAG 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 177 AATCCGTTCTCTGGACCTGGCTCTGGACTTATCCGGAGTGGCTTGGGAGCTTATGGGGAG 236
Query 121 AAGATTTTCGGATCTAGCTCTGAGTATGTGCAGAGCAACATAAGTCGCTACTTCTCCGAT 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AAGATTTTCGGTTCTAGCTCTGAGTATGTGCAGAGCAACATAAGTCGCTACTTCTCCGAT 296
Query 181 CCCCAATACTATTTTCAAGTGAATGACCAATATGTAAGGAACAAGTTGAAGATTGTTCTA 240
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 297 CCTCAATACTATTTTCAAGTGAATGACCAGTATGTGAGGAACAAGTTGAAGATTGTTCTA 356
Query 241 CTTCCATTCCTTCACAGGGGACACTGGACTAGAATATCAGAACCAGTTGGGGGTAGACTT 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 357 CTTCCATTCCTTCACAGGGGACACTGGACTCGAATATCAGAACCAGTTGGGGGTAGACTT 416
Query 301 TCATACAAACCCCCGATATACGACATAAATGCACCAGACTTATACATTCCGCTTATGGCC 360
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 417 TCATACAAACCACCGATATACGATATAAATGCACCAGACTTATACATTCCGCTTATGGCC 476
Query 361 TTTGGCACTTACGTTGTTCTTGCTGGTTTGTCACTAGGACTCTATGGGAAGTTTACTCCA 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 TTTGGCACTTACGTTGTTCTTGCTGGTTTGTCACTAGGACTCTATGGAAAGTTTACTCCA 536
Query 421 GAAGCTCTCAATTGGCTTTTTGTGAAAGGAATGGTTGGCTGGTTTTTGCAAGTCATGCTG 480
|||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 537 GAAGCTCTGAACTGGCTTTTTGTGAAAGGAATGGTTGGCTGGTTTTTGCAAGTGATGCTG 596
Query 481 CTGAAGATAACATTGCTTTCACTTGGAAGCGGAGAAGCACCC-CTCTTGGATATTGTGGC 539
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 597 CTGAAGATAACATTGCTTTCACTTGGAAGCGGAGAAGC-CCCTCTCTTGGATATTGTGGC 655
Query 540 ATATGCAGGCTATACTTTCACGGGCCTTTGTCTAGCTGTTCTTGGCAAGATAATCTGGGG 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 656 ATATGCAGGCTATACTTTCACAGGCCTTTGTCTAGCTGTTCTTGGCAAGATAATCTGGGG 715
Query 600 ATACTCTTACTATGTTTTGATTCCGTGGACCTGCTTATGCACCGGGGTTTTCTTAGTGAA 659
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 716 ATACTCTTACTATGTTTTGATTCCGTGGACCTGCTTATGCACTGGGGTATTCTTAGTGAA 775
Query 660 GACAATGAAGCGAGTTCTCTTTGCAGAAGCTAGGAGTTATGACTCAAGCAGGCATCACTA 719
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 776 GACAATGAAGCGAGTTCTCTTTGCAGAATCTAGGAGTTATGACTCAAGCAGGCATCACTA 835
Query 720 CCTCTTGATCTTTGTGGCTTTAGCCCAGTTTCCTCTTTTGATCTGGCTTGGTAACATTAG 779
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TCTCTTGATCTTTGTTGCTTTAGCCCAGTTTCCTCTTTTGATCTGGCTTGGTAACATTAG 895
Query 780 TGTGAATTGGCTCTTTTGA 798
|||||||||||||||||||
Sbjct 896 TGTGAATTGGCTCTTTTGA 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5