BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg349076

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60440.1 | Symbols:  | Phosphoglycerate mutase family protei...   566    1e-160


> AT3G60440.1 | Symbols:  | Phosphoglycerate mutase family protein 
| chr3:22337793-22339446 FORWARD LENGTH=1204
Length=1204

 Score =  566 bits (306),  Expect = 1e-160
 Identities = 360/386 (93%), Gaps = 3/386 (1%)
 Strand=Plus/Plus

Query  231  ATGCTTCTCAGATCTTGAAGCTACGTTTCCTCATGGAATGGTTGATCATAGTGTAGATCC  290
            ||| || ||||| |||||||| |  |||||| ||||||||||||||||||||||||||||
Sbjct  520  ATGATT-TCAGAACTTGAAGCGATTTTTCCTGATGGAATGGTTGATCATAGTGTAGATCC  578

Query  291  TGTTTATAAAGAGATGCCACAATGGGAAGAGACTGTGGATGGCTGCACAGATAGATTTCT  350
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  579  TGTTTATAAAGAGATGCCACAATGGGAAGAGACTGTGGAAGGCTGCACAGATAGATTTCT  638

Query  351  TAGTTTGATAAAGACTCTTGCTGATAAGTATCCTTCAGAGAACTTGCTCTTAGTCACTCA  410
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  639  TAGTTTGATAAAGACTCTTGCTGATAAGTATCCTTCAGAGAACTTGCTCTTGGTCACTCA  698

Query  411  CGGGGAAGGAGTAAGGACTACATTTGCAACCTTTAAAGGCGCAGATGTGT-CTTACGTAG  469
            ||||||||||||||||||||||||||||||||||||||||| | |||||| |  ||||||
Sbjct  699  CGGGGAAGGAGTAAGGACTACATTTGCAACCTTTAAAGGCGTACATGTGTACG-ACGTAG  757

Query  470  AGTATTGTGCTTGTGCTGAACTGAGAAGACAGGTATTGAGTCAAGATGGGTCTACTAAAG  529
            ||||||||| |||||||||| ||||||||||||| | |||| ||||||||||||||||||
Sbjct  758  AGTATTGTGGTTGTGCTGAATTGAGAAGACAGGTGTCGAGTAAAGATGGGTCTACTAAAG  817

Query  530  CAGGAGACTTTGAGGTGATTACAAGTCTTGGTCAATGTGGAATCAAGTACCATTCGTTGA  589
            | ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct  818  CTGGAGACTTTGAGGTGATCACAAGTCTTAGTCAATGTGGAATCAAGTACCATTCCTTGA  877

Query  590  GCACCTCAGACCAAACTCCTGTTTAA  615
            ||||| ||||||||||| ||| ||||
Sbjct  878  GCACCACAGACCAAACTTCTGCTTAA  903


 Score =  183 bits (99),  Expect = 1e-45
 Identities = 115/123 (93%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  99   CCTTTTATCCGATGTATCCAGACTGCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTCGAT  158
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  313  CCTTTTATCCGATGTATACAGACTGCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTCGAT  372

Query  159  TTCGATCCTAACGCTACGTCGTCTAACGACGTCACGTCCATCGATAAATCTAAGCTCAAG  218
            ||||||||||||||||| ||||| || |||||||| || |||||||||| |||||| |||
Sbjct  373  TTCGATCCTAACGCTACTTCGTCCAAAGACGTCACTTCAATCGATAAATATAAGCTTAAG  432

Query  219  GTT  221
            |||
Sbjct  433  GTT  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29638146730


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5