BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349109
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60470.1 | Symbols: | Plant protein of unknown function (DU... 370 2e-101
> AT3G60470.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr3:22344813-22347121 FORWARD LENGTH=1860
Length=1860
Score = 370 bits (200), Expect = 2e-101
Identities = 378/463 (82%), Gaps = 16/463 (3%)
Strand=Plus/Plus
Query 86 GAATGTTGGATCCTGAATTGGGCACGATCC-AGAAGTTGAAC-AAACAGGCTCCTGGGAT 143
||| |||| ||| |||| || |||| ||| | |||| ||| || | | ||||||||||
Sbjct 8 GAAGGTTGAATCATGAACCGGACACGGTCCTTG-AGTTAAACGAATC-GACTCCTGGGAT 65
Query 144 GTGGCT-CTTTCCGAAAAAT-CAGAAGCATTGTTGCATCTATAGAGTGCCTAACAGTATA 201
|||| | ||||| | |||| | | ||||| |||||||||| |||| ||| || || ||
Sbjct 66 GTGG-TGGTTTCCTACAAATCCTG-AGCATCGTTGCATCTACCGAGTCCCTGACCGTCTA 123
Query 202 CGTAGAGTAAAACCAGAAGCATATACTCCTCAATTACTGATTC-TTGGTCCTCTCCACCA 260
||| | ||||| |||||||| || || ||||||||||| || |||| ||||| |||||
Sbjct 124 CGTCGTGTAAATCCAGAAGCTTACACGCCTCAATTACT-CCTCATTGGACCTCTTCACCA 182
Query 261 TTCTTCAAAATCTCATGCTCTCAAGTCTCTTGGAGATATTACAGACTCAAAGTCAATGGG 320
||||| ||||| ||| |||||||| |||| ||||||||| ||| || |||||| ||||||
Sbjct 183 TTCTTTAAAATTTCAAGCTCTCAACTCTCGTGGAGATATCACAAACACAAAGTTAATGGG 242
Query 321 CTACTTAAACATGGAGGAGCATAAGAAGATTTACCTTGCCGA-ATTCGCACGAAGAG--T 377
||||||||||||||||||||||||||||||||||||||| || |||| || ||| || |
Sbjct 243 CTACTTAAACATGGAGGAGCATAAGAAGATTTACCTTGC-GAGATTCTCA-GAA-AGGCT 299
Query 378 TGAAGGGGAAAAGACCATCGATGGATTCAGAAGAATAATCGAAGAAGATGAAGAGATGAT 437
|| ||| |||| || || |||| | ||||||||| |||| ||||||| ||||| || ||
Sbjct 300 TGCAGGTCAAAAAACGATTGATGAACTCAGAAGAAGAATCAAAGAAGAAGAAGATATAAT 359
Query 438 CAGGGCAAGCTACTCGGAATCAACGGCCTGGATAGAATCTGCAATGTTTGTGGACATGAT 497
|||||||||||||| || ||||| |||||||| |||||| ||| ||| |||||||||||
Sbjct 360 AAGGGCAAGCTACTCTGAGTCAACTGCCTGGATTGAATCTCCAAAGTTCGTGGACATGAT 419
Query 498 CCTACATGACTCTGTTTTTGTACTAGAGTTCATTTTGAGGAGT 540
|||||| ||||||||||| || |||||||| |||| ||||||
Sbjct 420 CCTACACGACTCTGTTTTCATAATAGAGTTCCTTTTAAGGAGT 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5