BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg349127

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60650.1 | Symbols:  | unknown protein; Has 10 Blast hits to...   424    4e-118


> AT3G60650.1 | Symbols:  | unknown protein; Has 10 Blast hits 
to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:22419951-22420274 FORWARD 
LENGTH=324
Length=324

 Score =  424 bits (229),  Expect = 4e-118
 Identities = 275/296 (93%), Gaps = 7/296 (2%)
 Strand=Plus/Plus

Query  46   AATGACGAGATTGA-AAAACTAGAAGCTCCATCAACAAACAAGACGAGCACCGTATTTAG  104
            ||||| |||||| | |||||||||||||||||||||||||||||||| |||| |||| ||
Sbjct  34   AATGAAGAGATT-ACAAAACTAGAAGCTCCATCAACAAACAAGACGAACACCTTATTGAG  92

Query  105  CCAAGCACATGCCGTAGTTAATCATGGTGATATTAATGGTCAGATCAACGGGAAGAGGAC  164
            |||| ||||||| ||||||||||||||||  | ||||||||||||||||||||||| |||
Sbjct  93   CCAATCACATGCGGTAGTTAATCATGGTG--A-TAATGGTCAGATCAACGGGAAGAAGAC  149

Query  165  GAAGGACGA-TCACAGAGTAAAACGAGCTTCAGACAAGAAGGTGTCGTCTAAAAGAGTCT  223
            ||||||  | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  150  GAAGGA-AATTCACAGAGTAAAACGAGCTTCAGACAAAAAGGTGTCGTCTAAAAGAGTCT  208

Query  224  CCAGAACATGGAAAATTCCTAAGTATCCAAAGAAGCAGCCTAGATCAGATCAAGAACATC  283
            | ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct  209  CAAGAACTTGGAAAATCCCTAAGTATCCAAAGAAGCAGCCTAAATCAGATCAAGAACATC  268

Query  284  CCGGTTTCAATCTTGATTATATGCAGCCCACTACACACCCGCCTCATCATAATTGA  339
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  269  CGGGTTTCAATCTTGATTATATGCAGCCCACTACACACCCGCCTCATCATAATTGA  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5